FC921929

Overview
NameFC921929
Unique NameFC921929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length267
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2429 contig Csv1_Contig2429:92..358. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.431e-11
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATPSNE-PVDMGEALG 236
            W++P +F+PERFL     ++  G +F  LPFG GRR+CPG+  AL ++  T+  L+Q  +   P  +  +D  E  G
Sbjct:  411 WKKPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNVELLPPPGQSKIDTSEKGG 487          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C84A1_ARATH (Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.431e-11
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATPSN---EPVDMGEALGLSIQKARPL 263
            W +P  F+P RFL      D +G NFE +PFGSGRR+CPG+   L  ++  +A +L  F +  P       +DM +  GL+  KA  L
Sbjct:  422 WTDPDTFRPSRFLEPGVP-DFKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHILHCFTWKLPDGMKPSELDMNDVFGLTAPKATRL 508          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATPSNE-PVDMGEALG 236
            W++P +F+PERF      ++  G +F  +PFG GRR+CPG+  AL ++  T+  ++Q F+   P  +  VD  E  G
Sbjct:  410 WKKPEEFRPERFFEEESHVEANGNDFRYVPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKVDTSEKGG 486          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C71C1_MAIZE (Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 32/92 (34.78%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKD--IDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATP-----SNEPVDMGEALGLSIQKARPL 263
            W++  +F PERFL + +D  +D+ G++   +PFG+GRR C G +FA+  +E  LA L+  FD+  P     +   VDM +  G+++++ + L
Sbjct:  431 WDKAEEFFPERFLEQGRDAEVDMYGKDIRFVPFGAGRRICAGATFAIATVEIMLANLIYHFDWEMPAEMERTGAKVDMSDQFGMTLRRTQKL 522          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C71AI_ARATH (Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=CYP71A18 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 3
Query:   24 KFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFAT---PSNEPVDMGEALGLSIQKARPL 263
            +F+PER L     +D  GQ+ + +PFGSGRR CPG++ A+ ++E TLA L+  FD++    P+ +  D+ E  GL + +  PL
Sbjct:  409 EFKPERHLD--STLDYHGQDLKYIPFGSGRRICPGINLAMGLVEVTLANLVGRFDWSVDPGPNGDQPDLAEDFGLDVCRKNPL 489          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C71DF_MENPI (Cytochrome P450 71D15 OS=Mentha piperita GN=CYP71D15 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATPSN---EPVDMGEALGLS 242
            WE+P  F PERF    KD    G +FE +PFG+GRR CPG++F L  +E  LA LL  FD+          +DM EA GL+
Sbjct:  402 WEKPDTFWPERFDQVSKDF--MGNDFEFVPFGAGRRICPGLNFGLANVEVPLAQLLYHFDWKLAEGMKPSDMDMSEAEGLT 480          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C71AD_ARATH (Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=CYP71A13 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 3
Query:   24 KFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDF---ATPSNEPVDMGEALGLSIQKARPL 263
            +F+PER L     +D  G+N   +PFGSGRR CPG++ AL + E T+A L+  FD+   A P+ +  D+ EA+G+ + +  PL
Sbjct:  409 EFKPERHLD--SGLDYHGKNLNYIPFGSGRRICPGINLALGLAEVTVANLVGRFDWRVEAGPNGDQPDLTEAIGIDVCRKFPL 489          
The following BLAST results are available for this feature:
BLAST of FC921929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
TCMO_MEDSA4.431e-1137.66Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
C84A1_ARATH4.431e-1138.64Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CY... [more]
TCMO_ARATH5.787e-1136.36Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
C71C1_MAIZE5.787e-1134.78Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 S... [more]
C71AI_ARATH5.787e-1139.76Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=C... [more]
C71DF_MENPI7.558e-1145.68Cytochrome P450 71D15 OS=Mentha piperita GN=CYP71D... [more]
C71AD_ARATH7.558e-1140.96Cytochrome P450 71A13 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC06054A10T7 RindPdigS Citrus sinensis cDNA clone C06054A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921929 ID=FC921929; Name=FC921929; organism=Citrus sinensis; type=EST; length=267bp
ACGNTGTCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACA
AGGCACAAGGATATTGATGTCAGAGGACAAAATTTTGAATTGTTACCTTT
TGGTAGTGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTA
TGGAATTTACACTTGCTGCTTTACTTCAAGGCTTTGATTTTGCAACCCCA
TCAAATGAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAA
AGCTAGACCACTTGAAG
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