FC921929

Overview
NameFC921929
Unique NameFC921929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length267
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2429 contig Csv1_Contig2429:92..358. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C76A2_SOLME (Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 34/89 (38.20%), Postives = 58/89 (65.17%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATP---SNEPVDMGEALGLSIQKARPLE 266
            W++P  F+PERFL     IDV+GQ++ L+PFG+GRR C G+    ++M F L +LL+ F++  P   S + ++M  ++G++ +K   L+
Sbjct:  413 WDDPMSFKPERFLG--SKIDVKGQHYGLIPFGAGRRMCVGLPLGHRMMHFALGSLLREFEWELPDGVSPKSINMDGSMGVTARKRDSLK 499          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFD-FATPSNEPVDMGEALG 236
            W++P +F+PERFL     ++  G +F  LPFG GRR+CPG+  AL ++  T+  L+Q F+    P  + VD  E  G
Sbjct:  410 WKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQDKVDTTEKGG 486          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATPSNE-PVDMGEALG 236
            W+ P +F+PERFL     ++  G +F  LPFG GRR+CPG+  AL ++  TL  L+Q F+   P  +  +D  E  G
Sbjct:  410 WKNPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTSEKGG 486          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 3
Query:    6 VWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATPSNE-PVDMGEALG 236
            +W++P +F+PERFL     ++  G +F  LPFG GRR+CPG+  AL ++  T+  L+Q F+   P  +  +D  E  G
Sbjct:  409 LWKKPEEFRPERFLEEEAHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKIDTSEKGG 486          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATPSNE 209
            W+ P +F+PERFL     ++  G +F  LPFG GRR+CPG+  AL ++  TL  L+Q F+   P  +
Sbjct:  410 WKRPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQ 476          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C89A2_ARATH (Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRG-QNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATPSNEPVDMGEALGLSIQKARPLE 266
            WEEP  F+PERF+   + +D+ G +  +++PFG+GRR CPG+  A+  +E+ +A +++ F +       VD+ E L  ++    PL+
Sbjct:  411 WEEPMAFKPERFMGEEEAVDLTGSRGIKMMPFGAGRRICPGIGLAMLHLEYYVANMVREFQWKEVQGHEVDLTEKLEFTVVMKHPLK 497          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C77A2_SOLME (Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 3
Query:    6 VWEEPCKFQPERFLTRHKDIDVRG-QNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATPSNEPVDMGEALGLSI 245
            +W EP KF P+RF    +D D+ G    +++PFG GRR CPG++ A   +   LA L+Q F++A P N  VD  E L  ++
Sbjct:  417 LWSEPEKFDPDRFYLGKEDADITGVSGVKMIPFGMGRRICPGLNMATVHVSLMLARLVQEFEWADPENTRVDFTEKLEFTV 497          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C71B5_ARATH (Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CYP71B5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDFATP---SNEPVDMGEALGLSIQKARPLE 266
            W +P +F PERF+     I+ +GQ+FELLPFG+GRR CPG++  + ++E  L +LL  FD++ P   + + +DM E     I K   LE
Sbjct:  404 WTKPDEFIPERFVDN--PIEYKGQHFELLPFGAGRRVCPGMATGITIVELGLLSLLYFFDWSLPNGMTTKDIDMEEDGAFVIAKKVSLE 490          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: C71AE_ARATH (Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=CYP71A14 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 3
Query:   24 KFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFDF---ATPSNEPVDMGEALGLSIQKARPL 263
            +F+PER L     +D RG NFE +PFGSGRR CPG+ FA+ ++E TLA L+  F++      S +  D+ E+ GL + +  PL
Sbjct:  410 EFRPERHLDSL--VDFRGTNFEFIPFGSGRRICPGIGFAMALVEVTLANLVNRFNWRMEVQHSGDEYDLAESTGLDVCRKFPL 490          
BLAST of FC921929 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 3
Query:    9 WEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLQGFD-FATPSNEPVDMGEALG 236
            W++P +F+PERFL     ++  G +F  LPFG GRR+CPG+  AL ++  T+  L+Q F+    P    +D  E  G
Sbjct:  410 WKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGKSKIDTSEKGG 486          
The following BLAST results are available for this feature:
BLAST of FC921929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
C76A2_SOLME5.234e-1238.20Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76... [more]
TCMO_ZINEL6.836e-1240.26Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_POPTM6.836e-1240.26Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
TCMO_PEA6.836e-1238.46Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
TCMO_GLYEC6.836e-1241.79Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
C89A2_ARATH6.836e-1234.48Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CY... [more]
C77A2_SOLME6.836e-1240.74Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77... [more]
C71B5_ARATH6.836e-1241.57Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CY... [more]
C71AE_ARATH6.836e-1243.37Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=C... [more]
TCMO_CATRO8.928e-1238.96Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06054A10T7 RindPdigS Citrus sinensis cDNA clone C06054A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921929 ID=FC921929; Name=FC921929; organism=Citrus sinensis; type=EST; length=267bp
ACGNTGTCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACA
AGGCACAAGGATATTGATGTCAGAGGACAAAATTTTGAATTGTTACCTTT
TGGTAGTGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTA
TGGAATTTACACTTGCTGCTTTACTTCAAGGCTTTGATTTTGCAACCCCA
TCAAATGAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAA
AGCTAGACCACTTGAAG
back to top