DN617935

Overview
NameDN617935
Unique NameDN617935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617935 vs. ExPASy Swiss-Prot
Match: GRP78_ASHGO (78 kDa glucose-regulated protein homolog OS=Ashbya gossypii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.902e-16
Identity = 42/113 (37.17%), Postives = 71/113 (62.83%), Query Frame = -2
Query:  193 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWL-DGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADAGASMDED 528
            +IE+MV EAE Y+ ED+E + KVEA++ LENYA++++N +  + +  KL   DK+ + +A  + ++WL D +  A  +EF +K + L     PI +K+Y  G +DA    D++
Sbjct:  553 DIERMVAEAENYQKEDEEIRAKVEARHKLENYAHSLKNQVNGD-LGDKLEEDDKETLLEAANDVLEWLEDNSDSATKEEFNEKFESLSQTAYPITSKLYGAGASDATDDEDDE 664          
BLAST of DN617935 vs. ExPASy Swiss-Prot
Match: GRP78_KLULA (78 kDa glucose-regulated protein homolog OS=Kluyveromyces lactis GN=GRP78 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.790e-16
Identity = 40/113 (35.40%), Postives = 73/113 (64.60%), Query Frame = -2
Query:  193 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWL-DGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADAGASMDED 528
            +I++MV+EAEKY AED + K K EA+N  EN+ + ++N++  E ++  +   DK+ + D + E+++WL D + +AEA++FE+KM   +    PI+AK     G+ +G   +++
Sbjct:  558 DIDRMVEEAEKYAAEDAKFKAKSEARNTFENFVHYVKNSVNGE-LAEIMDEDDKETVLDNVNESLEWLEDNSDVAEAEDFEEKMASFKESVEPILAKASASQGSTSGEGFEDE 669          
BLAST of DN617935 vs. ExPASy Swiss-Prot
Match: HSP7X_PIG (Heat shock 70 kDa protein (Fragment) OS=Sus scrofa PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.473e-15
Identity = 36/92 (39.13%), Postives = 63/92 (68.48%), Query Frame = -2
Query:  256 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEA-IQWLDGNQLAEADEFEDKMKELEGICN 528
            E+E+MV+EA  +K ED+  + +V AKN+LE Y ++++ ++ +E +  K+P  D+ K++D  +E    WL+ NQLAE +E+E + +ELE I +
Sbjct:  255 EVERMVREAASHKVEDEAQRDRVAAKNSLEAYVFHVKGSLHEESLRDKIPEEDRCKVQDKCQEVPYLWLEHNQLAEKEEYEHQKRELEQIAS 346          
BLAST of DN617935 vs. ExPASy Swiss-Prot
Match: GRP78_PIG (78 kDa glucose-regulated protein (Fragment) OS=Sus scrofa GN=HSPA5 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.592e-14
Identity = 36/81 (44.44%), Postives = 60/81 (74.07%), Query Frame = -2
Query:  289 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFE 528
            EIE+MV +AEK+  ED + K++++ +N LE+YAY ++N I D EK+  KL + DK+ +E A+EE I+WL+ +Q A+ ++F+
Sbjct:  181 EIERMVNDAEKFAEEDKKLKERIDTRNELESYAYCLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFK 261          
BLAST of DN617935 vs. ExPASy Swiss-Prot
Match: HSP70_ONCVO (Heat shock 70 kDa protein (Fragment) OS=Onchocerca volvulus PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = -2
Query:  382 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKL 528
            EIE+MVQEAEKYKA+D+  K ++ AKNALE+YA+NM+ TI+DEK+  K+
Sbjct:  271 EIERMVQEAEKYKADDEAQKDRIAAKNALESYAFNMKQTIEDEKLKDKI 319          
BLAST of DN617935 vs. ExPASy Swiss-Prot
Match: HSP70_MIMIV (Heat shock 70 kDa protein homolog OS=Acanthamoeba polyphaga mimivirus GN=HSP70 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 29/98 (29.59%), Postives = 60/98 (61.22%), Query Frame = -2
Query:  235 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMY 528
            +IE+M++EA++++  D++ K  V++KN LENY ++++  + D   S  +  + + +IE    E ++++D N   +   ++ + KELE + NPI   +Y
Sbjct:  514 QIERMIREAKEFEEADNKKKAAVDSKNELENYTHSVKQAVTDPSNSNNIEESSRSQIESKCAEIMKFVDENPNEDQGTYDLRRKELEDLWNPIAVTLY 611          
The following BLAST results are available for this feature:
BLAST of DN617935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
GRP78_ASHGO2.902e-1637.1778 kDa glucose-regulated protein homolog OS=Ashbya... [more]
GRP78_KLULA3.790e-1635.4078 kDa glucose-regulated protein homolog OS=Kluyve... [more]
HSP7X_PIG5.473e-1539.13Heat shock 70 kDa protein (Fragment) OS=Sus scrofa... [more]
GRP78_PIG1.592e-1444.4478 kDa glucose-regulated protein (Fragment) OS=Sus... [more]
HSP70_ONCVO5.664e-1263.27Heat shock 70 kDa protein (Fragment) OS=Onchocerca... [more]
HSP70_MIMIV6.262e-1129.59Heat shock 70 kDa protein homolog OS=Acanthamoeba ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01O06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617935 ID=DN617935; Name=DN617935; organism=Citrus sinensis; type=EST; length=529bp
TTAAAAACATAATATTCTTTATGCATACACCAGGAAACAGTATTTACATG
TAACAGAAGCAGGAAAAGGAAGAAAAGATCACACTCCCAACTCAACCCCT
AATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTCCTC
AATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCTCAT
CCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCAATA
ATTGGGTTGCAGATGCCCTCCAGCTCTTTCATCTTATCTTCAAACTCATC
TGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAATGG
CATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATCTTT
TCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGCATT
CTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATTTTT
CTGCCTCTTGTACCATCTTCTCTATCTCC
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