CX045938

Overview
NameCX045938
Unique NameCX045938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.555e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.031e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.665 bits (361), Expect = 1.008e-33
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.525e-34
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 142.51 bits (358), Expect = 2.246e-33
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGR LADYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = -2 
Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = -2 
Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX045938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
UBIQ_ARATH6.982e-3597.37Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_COPCO1.555e-3496.05Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHLRE2.031e-3496.05Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST3.465e-3494.74Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO3.465e-3494.74Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA3.465e-3494.74Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE3.465e-3494.74Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL3.465e-3494.74Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBL1_ORYSJ4.525e-3494.74Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_NEUCR5.910e-3494.74Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_4H05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-4H05-O10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX045938 ID=CX045938; Name=CX045938; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTGCACATTAAACATGTATTTATTCAAGAAAAAAA
TTCTTAAATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAAA
AACAGAGTTCAACTACCACAACCAAAATAAACTTCAAATAGTTATTTAAG
CCATTTCACCAATAGCAAGCAAACATTAACCAAGACAAACCGAAGCAAAT
AAAACACACACACACCCAGATGACCAAACTCAAAAACCTCCACGGAGACG
GAACACAAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAG
TCCTTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCT
GGGGGAATCCCCTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATTGT
GTCCGAACTCTCAACCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCA
CAAAAATCTGCATACCACCACGGAGGCGAAAAACCAAGTGAAGAGTGGAT
TCTTTCTGGATGTTATAGTCTGCAAGAATCCTTCCATCTTCAAGCTGCTT
TCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTT
GAATTTTTGCTTTCACGTTGTCGATGGTGTCAGAACTTTCAACCTCAAAA
GTAATTGTTTTTCCGGTGAGGGTTTTCACAAAGATCTGCATGCCACCACG
GAGACCAAGCACCAAATGGAAGGTTGACTCCTTCTGG
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