CX045938 | Citrus Genome Database

Overview


Name	CX045938
Unique Name	CX045938
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	737

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX045938 vs. ExPASy Swiss-Prot

BLAST of CX045938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97


Match Name	E-value	Identity	Description
UBIQ_RABIT	1.720e-33	93.42	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]
UBIQ_PONPY	1.720e-33	93.42	Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2	[more]
UBIQ_PLUXY	1.720e-33	93.42	Ubiquitin OS=Plutella xylostella PE=3 SV=1	[more]
UBIQ_PIG	1.720e-33	93.42	Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1	[more]
UBIQ_PANTR	1.720e-33	93.42	Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2	[more]
UBIQ_OPHHA	1.720e-33	93.42	Ubiquitin OS=Ophiophagus hannah PE=3 SV=1	[more]
UBIQ_MOUSE	1.720e-33	93.42	Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1	[more]
UBIQ_MANSE	1.720e-33	93.42	Ubiquitin OS=Manduca sexta PE=3 SV=1	[more]
UBIQ_MACFA	1.720e-33	93.42	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]
UBIQ_ICTPU	1.720e-33	93.42	Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_4H05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-4H05-O10-1-7.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX045938 ID=CX045938; Name=CX045938; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTGCACATTAAACATGTATTTATTCAAGAAAAAAA
TTCTTAAATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAAA
AACAGAGTTCAACTACCACAACCAAAATAAACTTCAAATAGTTATTTAAG
CCATTTCACCAATAGCAAGCAAACATTAACCAAGACAAACCGAAGCAAAT
AAAACACACACACACCCAGATGACCAAACTCAAAAACCTCCACGGAGACG
GAACACAAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAG
TCCTTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCT
GGGGGAATCCCCTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATTGT
GTCCGAACTCTCAACCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCA
CAAAAATCTGCATACCACCACGGAGGCGAAAAACCAAGTGAAGAGTGGAT
TCTTTCTGGATGTTATAGTCTGCAAGAATCCTTCCATCTTCAAGCTGCTT
TCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTT
GAATTTTTGCTTTCACGTTGTCGATGGTGTCAGAACTTTCAACCTCAAAA
GTAATTGTTTTTCCGGTGAGGGTTTTCACAAAGATCTGCATGCCACCACG
GAGACCAAGCACCAAATGGAAGGTTGACTCCTTCTGG