CX045938 | Citrus Genome Database

Overview


Name	CX045938
Unique Name	CX045938
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	737

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CX045938 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  236 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHFVFRLRGG 463
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLH V RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  464 MQIFVKTLTGKTITFEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVFRLRGG 691
            MQIFVKTLTGKTIT EVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR L+DYNIQKESTLHLV RLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX045938 vs. ExPASy Swiss-Prot

BLAST of CX045938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97


Match Name	E-value	Identity	Description
UBIQ_HUMAN	1.720e-33	93.42	Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1	[more]
UBIQ_HORSE	1.720e-33	93.42	Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2	[more]
UBIQ_GORGO	1.720e-33	93.42	Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S...	[more]
UBIQ_FELCA	1.720e-33	93.42	Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1	[more]
UBIQ_DROME	1.720e-33	93.42	Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1...	[more]
UBIQ_CRIGR	1.720e-33	93.42	Ubiquitin OS=Cricetulus griseus PE=3 SV=1	[more]
UBIQ_CHICK	1.720e-33	93.42	Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1	[more]
UBIQ_CERCA	1.720e-33	93.42	Ubiquitin OS=Ceratitis capitata PE=1 SV=1	[more]
UBIQ_CAVPO	1.720e-33	93.42	Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1	[more]
UBIQ_CANFA	1.720e-33	93.42	Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_4H05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-4H05-O10-1-7.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX045938 ID=CX045938; Name=CX045938; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTGCACATTAAACATGTATTTATTCAAGAAAAAAA
TTCTTAAATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAAA
AACAGAGTTCAACTACCACAACCAAAATAAACTTCAAATAGTTATTTAAG
CCATTTCACCAATAGCAAGCAAACATTAACCAAGACAAACCGAAGCAAAT
AAAACACACACACACCCAGATGACCAAACTCAAAAACCTCCACGGAGACG
GAACACAAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAG
TCCTTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCT
GGGGGAATCCCCTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATTGT
GTCCGAACTCTCAACCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCA
CAAAAATCTGCATACCACCACGGAGGCGAAAAACCAAGTGAAGAGTGGAT
TCTTTCTGGATGTTATAGTCTGCAAGAATCCTTCCATCTTCAAGCTGCTT
TCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTT
GAATTTTTGCTTTCACGTTGTCGATGGTGTCAGAACTTTCAACCTCAAAA
GTAATTGTTTTTCCGGTGAGGGTTTTCACAAAGATCTGCATGCCACCACG
GAGACCAAGCACCAAATGGAAGGTTGACTCCTTCTGG