DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.658e-39
Identity = 78/158 (49.37%), Postives = 111/158 (70.25%), Query Frame = 2
Query:   92 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            ++ DY+FK+++IGDS  GKS LL RFA N +S    +TIGV+F+ KT+ ID+ T+K QIWDTAGQER+R +TS YYRGA G + VYD+T + SFDH+   WL ++  +A  N+  +LIGNK DL   R V  ++A+  A++ N+ ++E SA   +NVE
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.166e-39
Identity = 78/158 (49.37%), Postives = 115/158 (72.78%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GNK DL   + V  + A+ FA    + F+ETSA  ATNVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.166e-39
Identity = 76/158 (48.10%), Postives = 115/158 (72.78%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+++D K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T   SF+++ +W+ E++ +A  ++  +L+GNKCDL   + V T  A+E+A    + F+ETSA  + NVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.829e-39
Identity = 79/154 (51.30%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D+ FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ KTL++D KT+K QIWDTAGQER+R +TS+YYRGA G +LVYD T + SF ++ +W+ E+  +A +N+  +L+GNK DL + + V +  A+ FA+   + F+ETSA  ATNVE
Sbjct:    8 DFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVE 161          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 3.694e-39
Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            ++  D++FK ++IG++  GKS LL +F    F  DS  TIGVEF +K +S+ +K VK QIWDTAGQER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIVI+L GNK DL + R V   +A  FAQ   L F+ETSAL   NVE
Sbjct:    2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.694e-39
Identity = 80/162 (49.38%), Postives = 114/162 (70.37%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVE 562
            GD ++  D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  KTL I  K VK QIWDTAGQER+R +T +YYR A GA+L YD++KR +F  +  W++++R +A  NIV +LIGNK DL  LR VP  +AQ  A+  + L  +ETSA +++NVE
Sbjct:    7 GDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVE 168          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.825e-39
Identity = 78/158 (49.37%), Postives = 115/158 (72.78%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T  ++ KTVK QIWDTAGQER+R +TS+YYRGA G ++VYD+T + SF+++ +WL E+  +A + +  +L+GNK D+   + V    A+EFA   N+ F+ETSA ++TNVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.230e-39
Identity = 73/154 (47.40%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+ LL RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+   R V  E  ++ A    + F+E SA  + NVE
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 8.230e-39
Identity = 80/158 (50.63%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            ++  D++FK ++IG++  GKS LL +F   +F  DS  TIGVEF +K +++  K VK QIWDTAGQER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIVI+L GNK DL + R V   +A  FAQ   L F+ETSAL   NVE
Sbjct:    2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 8.230e-39
Identity = 80/158 (50.63%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            ++  D++FK ++IG++  GKS LL +F   +F  DS  TIGVEF +K +++  K VK QIWDTAGQER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIVI+L GNK DL + R V   +A  FAQ   L F+ETSAL   NVE
Sbjct:    2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 159          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1_THEAN1.658e-3949.37Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
YPTV1_VOLCA2.166e-3949.37GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1B_DICDI2.166e-3948.10Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1D_DICDI2.829e-3951.30Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB4A_DANRE3.694e-3951.27Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB43_RAT3.694e-3949.38Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
YPT1_SCHPO4.825e-3949.37GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB8B_BOVIN8.230e-3947.40Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB4A_RAT8.230e-3950.63Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_HUMAN8.230e-3950.63Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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