DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 8.230e-39
Identity = 80/158 (50.63%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            ++  D++FK ++IG++  GKS LL +F   +F  DS  TIGVEF +K +++  K VK QIWDTAGQER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIVI+L GNK DL + R V   +A  FAQ   L F+ETSAL   NVE
Sbjct:    2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.230e-39
Identity = 81/162 (50.00%), Postives = 114/162 (70.37%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVE 562
            GD +++ D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  KTL I  K VK QIWDTAGQER+R +T +YYR A GA+L YD+TKR SF  +  W++++R +A  NIV +LIGNK DL  LR V   +AQ  A+  + L  +ETSA +++NVE
Sbjct:    9 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE 170          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.075e-38
Identity = 79/162 (48.77%), Postives = 113/162 (69.75%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVE 562
            GD ++  D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  KTL I  K VK QIWDTAGQER+R +T +YYR A GA+L YD++KR +F  +  W++++R +A  NIV +LIGNK DL   R VP  +AQ  A+  + L  +ETSA +++NVE
Sbjct:    7 GDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVE 168          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.404e-38
Identity = 73/154 (47.40%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+ LL RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G M VYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+   R V  E  ++ A    + F+ETSA  + NVE
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.404e-38
Identity = 74/154 (48.05%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+   R V  E  ++ A    + FMETSA    NVE
Sbjct:    6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.404e-38
Identity = 74/154 (48.05%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+   R V  E  ++ A    + FMETSA    NVE
Sbjct:    6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.404e-38
Identity = 74/154 (48.05%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+   R V  E  ++ A    + FMETSA    NVE
Sbjct:    6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.404e-38
Identity = 74/154 (48.05%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+   R V  E  ++ A    + FMETSA    NVE
Sbjct:    6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.404e-38
Identity = 74/154 (48.05%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+   R V  E  ++ A    + FMETSA    NVE
Sbjct:    6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.404e-38
Identity = 74/154 (48.05%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNKCD+   R V  E  ++ A    + FMETSA    NVE
Sbjct:    6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4A_BOVIN8.230e-3950.63Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB43_HUMAN8.230e-3950.00Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB43_MOUSE1.075e-3848.77Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB8_DISOM1.404e-3847.40Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8A_RAT1.404e-3848.05Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE1.404e-3848.05Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA1.404e-3848.05Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN1.404e-3848.05Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA1.404e-3848.05Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN1.404e-3848.05Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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