DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.404e-38
Identity = 78/158 (49.37%), Postives = 113/158 (71.52%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N   D +FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTAGQER+  +TS+YYRGA G ++VYD+T ++S+ ++ +WL E+  HA +N+  +L+GNK DL + + V    A+EFA    + F+ETSA  ATNVE
Sbjct:    2 NPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.395e-38
Identity = 78/158 (49.37%), Postives = 112/158 (70.89%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KTVK QIWDTAGQER+R +TS+YYRGA G  +VYD+T   SF+++ +WL E+  +A + +  +L+GNK D+   + V    A+EFA    + F+ETSA  A+NVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.127e-38
Identity = 78/158 (49.37%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            ++  D++FK ++IG++  GKS LL +F   +F  DS  TIG+EF +K +++  K VK QIWDTAGQER+R+VT +YYRGA GA+LVYD+T R++++ +  WL + R  A +NIV++L GNK DL + R V   +A  FAQ   L F+ETSAL   NVE
Sbjct:    2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.335e-38
Identity = 72/154 (46.75%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+  L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G MLVYD+T  +SF+++  W+  +  HA  ++  M++GNKCD    R V  E  ++ A    + FMETSA    N+E
Sbjct:    6 DYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.967e-38
Identity = 75/155 (48.39%), Postives = 106/155 (68.39%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 565
            +Y  K ++ G   VGKS LL +F   EFS +   TIGVEFQT+++ ID   +K +IWDTAGQE +R++T+ YYRGA  A+L YD+TKRQSF +++ W+DE+R  +  NIVI LIGNKCD    R + TE+  + A+  ++ F ETSA +  +VE+
Sbjct:    3 EYHLKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETSAKDYESVES 157          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.100e-38
Identity = 73/154 (47.40%), Postives = 104/154 (67.53%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+ K++LIGDS VGKS LL RF+ + F+     TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G +L+YD+T ++SFD++  W   +  HA +N+  +LIGNKCD    R V  E  Q  A    + F+E SA    NV+
Sbjct:    7 DYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVD 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.552e-37
Identity = 76/155 (49.03%), Postives = 104/155 (67.10%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG-SLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+ K++LIGDS VGKS LL RF+   F+     TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G +LVYD+T   SF+++  W+  +  HA  N+  +L+GNK D+  S RAVPT   Q  A    + F ETSA    NVE
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVE 167          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.552e-37
Identity = 76/155 (49.03%), Postives = 104/155 (67.10%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG-SLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+ K++LIGDS VGKS LL RF+   F+     TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G +LVYD+T   SF+++  W+  +  HA  N+  +L+GNK D+  S RAVPT   Q  A    + F ETSA    NVE
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVE 167          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.027e-37
Identity = 75/158 (47.47%), Postives = 114/158 (72.15%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            + + DY+FK++LIGDS+VGKS LL RFA + +     +TIGV+F+ +T+  D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD T+ +SF+++ +WL E+  +A++++  +LIGNK D+   + V TE  +  A    + F+ETSA ++ NVE
Sbjct:    2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.027e-37
Identity = 76/158 (48.10%), Postives = 113/158 (71.52%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N    Y+FK++LIGDS VGKS LL RFA + +S    +TIGV+F+ +T+ ++ KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T + +F+++ +WL E+   A +N+  +L+GNK DL + + V    A+ FA    + F+ETSA ++TNVE
Sbjct:    2 NPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVE 159          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1C_HUMAN1.404e-3849.37Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
YPT1_NEUCR2.395e-3849.37GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB4A_MOUSE3.127e-3849.37Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB8A_CHICK5.335e-3846.75Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RABQ_DICDI6.967e-3848.39Ras-related protein RabQ OS=Dictyostelium discoide... [more]
YPT2_SCHPO9.100e-3847.40GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RB1BV_BETVU1.552e-3749.03Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH1.552e-3749.03Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RABD1_ARATH2.027e-3747.47Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1A_DICDI2.027e-3748.10Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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