DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.648e-37
Identity = 68/154 (44.16%), Postives = 111/154 (72.08%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK++LIGDS VGK+ L+ RFA + F+    +TIG++F+ +T+ I+ K +K Q+WDTAGQER++ +T+AYYRGA+G +LVYD+T  +SF+++  W+  ++ +A   +  +L+GNKCD+ + R V  E A++ A+   + F ETSA  + NV+
Sbjct:    6 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVD 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.458e-37
Identity = 73/154 (47.40%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ +T+ +D K +K QIWDTAGQER+R +T+AYYRGA+G MLVYD+T  +SFD++  W+  +  HA  ++  M++GNK D+   R V  E  ++ A    + FMETSA    NVE
Sbjct:    6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.458e-37
Identity = 71/154 (46.10%), Postives = 105/154 (68.18%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+ K++LIGDS VGKS LL RF+ + F+     TIG++F+ +T+ ++ K +K QIWDTAGQER+R +T+AYYRGA+G +LVYD+T  +SF ++  W+  +  HA  ++  MLIGNKCD+   + V +   +  A    + F+ETSA  + NVE
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVE 166          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.458e-37
Identity = 68/154 (44.16%), Postives = 110/154 (71.43%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK++LIGDS VGK+ L+ RFA + F+    +TIG++F+ +T+ I+ K +K Q+WDTAGQER++ +T+AYYRGA+G +LVYD+T  +SF+++  W+  ++ +A   +  +L+GNKCD+ + R V  E A+  A+   + F ETSA  + NV+
Sbjct:    6 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVD 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.458e-37
Identity = 70/154 (45.45%), Postives = 109/154 (70.78%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYD+T  +SF+++++WL  +  HA++++  ML+GNKCD+   R VP    ++ A+   + F ETSA    N+E
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.458e-37
Identity = 70/154 (45.45%), Postives = 109/154 (70.78%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYD+T  +SF+++++WL  +  HA++++  ML+GNKCD+   R VP    ++ A+   + F ETSA    N+E
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.458e-37
Identity = 70/154 (45.45%), Postives = 109/154 (70.78%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYD+T  +SF+++++WL  +  HA++++  ML+GNKCD+   R VP    ++ A+   + F ETSA    N+E
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.516e-37
Identity = 75/170 (44.12%), Postives = 120/170 (70.59%), Query Frame = 2
Query:   56 ASTMSNLYG-DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +++ S ++G + + + D + K+++IGDS VGKS +L RFA N F+    +TIGV+F  +T+ +D K +K QIWDTAGQER++ +T++YYRGA G ++VYD+T   SF+ + RWL ++   A  +++ +++GNKCDL S RAV  + A++FA   N+  METSA E+T ++
Sbjct:   15 STSTSFIHGSESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAID 184          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.516e-37
Identity = 70/154 (45.45%), Postives = 109/154 (70.78%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYD+T  +SF+++++WL  +  HA++++  ML+GNKCD+   R VP    ++ A+   + F ETSA    N+E
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.898e-37
Identity = 70/154 (45.45%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D + K++LIGDS VGKS LL RF  ++F+     TIG++F+ +T+ I ++ VK Q+WDTAGQER+R +T+AYYRGA+G +LVYD+T  +SF+++  W   ++ +A++ + ++L+GNKCDL   R V TE  Q  A +  + F+E S+    NVE
Sbjct:    9 DLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVE 162          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_MOUSE2.648e-3744.16Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB8A_PONAB3.458e-3747.40Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_DICDI3.458e-3746.10Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB13_RAT3.458e-3744.16Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB10_PONAB3.458e-3745.45Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE3.458e-3745.45Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN3.458e-3745.45Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB1C_DICDI4.516e-3744.12Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB10_CANFA4.516e-3745.45Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RYL1_YARLI5.898e-3745.45Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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