DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 76/150 (50.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + RAV  ++AQ +A   +L FMETSA  + NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 170          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 76/150 (50.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + RAV  ++AQ +A   +L FMETSA  + NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 170          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 76/150 (50.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + RAV  ++AQ +A   +L FMETSA  + NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 170          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 76/150 (50.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + RAV  ++AQ +A   +L FMETSA  + NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 170          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 74/153 (48.37%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+ K ++IG  +VGKS LL RF  N+F   S  TIGV+F ++ + I  K VK QIWDTAGQER+R+V  +YYRG+ G  LVYD+T R+S++H+  WL +++  A  ++ I+L+GNK DL   R V   +A   AQ   L FMETSAL    VE
Sbjct:    6 YLVKFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQREVTFLEASRIAQENGLLFMETSALTGEGVE 158          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.314e-36
Identity = 73/159 (45.91%), Postives = 107/159 (67.30%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVE 562
            ++  DY+FK++LIGDS VGK+ ++  F    ++   + TIGV+F  ++L ID K VK Q+WDTAGQER+R +T +YYR A  A++ YD+T+R +F+ +  W+ E+  +   N+VIMLIGNKCDL   R V  EDA   A++  L   +ETSA E+ N+E
Sbjct:   11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIE 169          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.314e-36
Identity = 68/154 (44.16%), Postives = 110/154 (71.43%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK++LIGDS VGK+ L+ RFA + F+    +TIG++F+ +T+ I+ K +K Q+WDTAGQER++ +T+AYYRGA+G +LVYD+T  +SF+++  W+  ++ +A   +  +L+GNKCD+ + R V  E A + A+   + F ETSA  + NV+
Sbjct:    6 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVD 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.314e-36
Identity = 69/154 (44.81%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++ + KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYD+T  +SF+++++WL  +  HA++++  ML+GNKCD+   R VP    ++ A+   + F ETSA    N+E
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.716e-36
Identity = 71/154 (46.10%), Postives = 104/154 (67.53%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++ K++LIGDS VGKS LL RF+   F+    ATIG++F+ +T+ ++ K +K QIWDTAGQER+R +T+AYYRGA+G +LVYD+T  +SF  +  W+  +  HA  ++  MLIGNKCD+   + V +   +  A    + F+ETSA  + NVE
Sbjct:   13 DFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVE 166          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.823e-36
Identity = 70/161 (43.48%), Postives = 111/161 (68.94%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            G  +Q  DY+FK+++IG+S+VGK+  L R+  + F+    +T+G++F+ KT+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++ +N  ++L+GNKCD+ S R V  +  ++ A +  L F ETSA E  NV+
Sbjct:   13 GQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVK 173          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5A_MACFA1.006e-3650.67Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN1.006e-3650.67Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA1.006e-3650.67Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN1.006e-3650.67Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB4_DICDI1.006e-3648.37Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
RAB19_HUMAN1.314e-3645.91Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB13_MESAU1.314e-3644.16Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB10_CHICK1.314e-3644.81Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB8B_DICDI1.716e-3646.10Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB3_CAEEL3.823e-3643.48Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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