DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 3.823e-36
Identity = 73/159 (45.91%), Postives = 107/159 (67.30%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVE 562
            ++ +DY+FKV+LIGDS VGK+ ++  F    +S   + TIGV+F  ++L ID K VK Q+WDTAGQER+R +T +YYR A  A++ YD+T+R +F+ +  W+ E+  +   N+VIMLIGNK DL   R V  EDA   A++  L   +ETSA E+ N++
Sbjct:   11 DENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNID 169          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.993e-36
Identity = 71/158 (44.94%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            ++K +++FK + +GDS VGKS +L RF  + F+    +TIGV+F+ KT+ I+ K +K QIWDTAGQER+R   ++ YRG    M+VYD+T ++SF+++A+W+ E+  +A  N++ M+IGNK D+ S + V    AQEFA   ++ F ETSA +A N+E
Sbjct:    2 SKKYEHLFKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.993e-36
Identity = 70/154 (45.45%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK+VLIG++ VGK+ L+ RF +  F     ATIGV+F  KT+ I+ + VK QIWDTAGQER+R++T +YYR A   +L YD+T  +SF  +  WL E+  +A   ++ +L+GNK DL   R V  + A+EF++ ++++++ETSA E+ NVE
Sbjct:    7 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.993e-36
Identity = 70/154 (45.45%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK+VLIG++ VGK+ L+ RF +  F     ATIGV+F  KT+ I+ + VK QIWDTAGQER+R++T +YYR A   +L YD+T  +SF  +  WL E+  +A   ++ +L+GNK DL   R V  + A+EF++ ++++++ETSA E+ NVE
Sbjct:    7 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.993e-36
Identity = 70/154 (45.45%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK+VLIG++ VGK+ L+ RF +  F     ATIGV+F  KT+ I+ + VK QIWDTAGQER+R++T +YYR A   +L YD+T  +SF  +  WL E+  +A   ++ +L+GNK DL   R V  + A+EF++ ++++++ETSA E+ NVE
Sbjct:    7 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.993e-36
Identity = 76/155 (49.03%), Postives = 104/155 (67.10%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D  FKV+L+GDS VGK+ LL RF    F   +  +T+G++F+ K + +D   VK QIWDTAGQER+R+VT AYYR A   +L+YD+T + SFD +  WL E++ HA  ++V+ML+GNK D    RAV  EDA++ A+   L FMETSA    NV+
Sbjct:   61 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVD 215          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.521e-36
Identity = 77/154 (50.00%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK+++IGDS VGKS LL RFA N FS     TIGV+F+ +T+ I+ + VK QIWDTAGQER+R +TS YYRG  G ++VYD+T  +SF ++ RWL E+  + D ++  +L+GNK D    + V TEDA +FA +  +   ETSA E  NVE
Sbjct:    6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVE 158          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.521e-36
Identity = 77/154 (50.00%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK+++IGDS VGKS LL RFA N FS     TIGV+F+ +T+ I+ + VK QIWDTAGQER+R +TS YYRG  G ++VYD+T  +SF ++ RWL E+  + D ++  +L+GNK D    + V TEDA +FA +  +   ETSA E  NVE
Sbjct:    6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVE 158          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.521e-36
Identity = 77/154 (50.00%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK+++IGDS VGKS LL RFA N FS     TIGV+F+ +T+ I+ + VK QIWDTAGQER+R +TS YYRG  G ++VYD+T  +SF ++ RWL E+  + D ++  +L+GNK D    + V TEDA +FA +  +   ETSA E  NVE
Sbjct:    6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVE 158          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.521e-36
Identity = 73/159 (45.91%), Postives = 107/159 (67.30%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVE 562
            ++ +DY+FKV+LIGDS VGK+ ++  F    +S   + TIGV+F  ++L ID K VK Q+WDTAGQER+R +T +YYR A  A++ YD+T+R +F+ +  W+ E+  +   N+VIMLIGNK DL   R V  EDA   A++  L   +ETSA E+ N++
Sbjct:   11 DENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESRNID 169          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB19_MOUSE3.823e-3645.91Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RABA_DICDI4.993e-3644.94Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB30_MOUSE4.993e-3645.45Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN4.993e-3645.45Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN4.993e-3645.45Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB26_BOVIN4.993e-3649.03Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB35_RAT6.521e-3650.00Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE6.521e-3650.00Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN6.521e-3650.00Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB19_RAT6.521e-3645.91Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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