DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.521e-36
Identity = 69/154 (44.81%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D +FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYD+T  +SF+++++WL  +  HA++++  ML+GNKCD+   R V     ++ A+   + F ETSA    N+E
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.517e-36
Identity = 75/150 (50.00%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+++ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T +++F     W+ EL+  A  +IVI L GNK DL S R V  E+AQ +A   +L FMETSA  A NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNV 170          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.517e-36
Identity = 70/158 (44.30%), Postives = 106/158 (67.09%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +Q  DY+FK++LIG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+  ++SF  +  W  +++ ++  N  ++L+GNKCDL   R VP ED +  A      F E SA E  NV+
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK 173          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.517e-36
Identity = 71/173 (41.04%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   53 VASTMSNLYGDYN---QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +AS     YG  +   Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R + TE  Q   ++    F ETSA +  NV+
Sbjct:    9 MASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVK 181          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 8.517e-36
Identity = 71/173 (41.04%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   53 VASTMSNLYGDYN---QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +AS     YG  +   Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R + TE  Q   ++    F ETSA +  NV+
Sbjct:    9 MASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVK 181          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 8.517e-36
Identity = 70/157 (44.59%), Postives = 108/157 (68.79%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R VPTE  Q  A++    F E SA E  +V
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV 172          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.112e-35
Identity = 71/150 (47.33%), Postives = 104/150 (69.33%), Query Frame = 2
Query:  113 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            K+VL+GD   GKS L+ RF +++F    ++TIG  F ++TL+++  TVK +IWDTAGQERY ++   YYRGA  A++V+D+T + SF+   +W+ EL+   + N+V+ L GNK DL   R V  E+A+ +AQ  +LFFMETSA  ATNV+
Sbjct:   12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVK 161          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.112e-35
Identity = 70/158 (44.30%), Postives = 106/158 (67.09%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +Q  DY+FK++LIG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+  ++SF  +  W  +++ ++  N  ++L+GNKCDL   R VP ED +  A      F E SA E  NV+
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK 173          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.453e-35
Identity = 70/162 (43.21%), Postives = 107/162 (66.05%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 565
            G  ++  D + K++L+GDS VGKS LL RF  ++F+     TIG++F+ +T+    K +K Q+WDTAGQER+R +T+AYYRGA+G +L+YD+T  +SF+++  W   +  HA+++  I L+GNKCD    R V  E  QE A + N+ F+E SA    NV++
Sbjct:    5 GTSSRAYDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDS 166          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.897e-35
Identity = 74/150 (49.33%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+++ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T +++F     W+ EL+  A  +IVI L GNK DL + R V  E+AQ +A   +L FMETSA  A NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNV 170          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_DISOM6.521e-3644.81Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB5B_CHICK8.517e-3650.00Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB3D_MOUSE8.517e-3644.30Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3C_HUMAN8.517e-3641.04Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN8.517e-3641.04Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3B_HUMAN8.517e-3644.59Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RHA1_ARATH1.112e-3547.33Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RAB3D_HUMAN1.112e-3544.30Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
SEC4_CANAL1.453e-3543.21Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB5B_PONAB1.897e-3549.33Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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