DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.897e-35
Identity = 74/150 (49.33%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+++ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T +++F     W+ EL+  A  +IVI L GNK DL + R V  E+AQ +A   +L FMETSA  A NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNV 170          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.897e-35
Identity = 74/150 (49.33%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+++ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T +++F     W+ EL+  A  +IVI L GNK DL + R V  E+AQ +A   +L FMETSA  A NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNV 170          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.897e-35
Identity = 68/158 (43.04%), Postives = 109/158 (68.99%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YD+T   SF+ +  W+ +++ ++  N  ++L+GNKCD+   R +  E  ++ A +  + F ETSA E  NV+
Sbjct:   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVK 172          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.897e-35
Identity = 74/155 (47.74%), Postives = 104/155 (67.10%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D  FKV+L+GDS VGK+ LL RF    F   +  +T+G++F+ K L +D   VK QIWDTAGQER+R+VT AYYR A   +L+YD+T + SFD++  WL E++ +A +++V+ML+GNK D    R V  ED ++ A+   L FMETSA    NV+
Sbjct:   62 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVD 216          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.897e-35
Identity = 72/159 (45.28%), Postives = 105/159 (66.04%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVE 562
            ++  DY+FK++LIGDS VGK+ ++  F    +    + TIGV+F  + L ID K VK Q+WDTAGQER+R +T +YYR A  A++ YD+T+R +F+ +  W+ E+  +   N+VIMLIGNKCDL   R V  EDA   A++  L   +ETSA E+ N++
Sbjct:   11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNID 169          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.478e-35
Identity = 69/157 (43.95%), Postives = 108/157 (68.79%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R VPTE  +  A++    F E SA E  +V
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISV 172          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.478e-35
Identity = 69/157 (43.95%), Postives = 108/157 (68.79%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R VPTE  +  A++    F E SA E  +V
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISV 172          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.478e-35
Identity = 69/157 (43.95%), Postives = 108/157 (68.79%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R VPTE  +  A++    F E SA E  +V
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISV 172          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.478e-35
Identity = 70/173 (40.46%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   53 VASTMSNLYGDY---NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +AS   + YG     +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R V +E  ++ A      F E SA +  NV+
Sbjct:    1 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVK 173          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.478e-35
Identity = 70/173 (40.46%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   53 VASTMSNLYGDY---NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +AS   + YG     +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R V +E  ++ A      F E SA +  NV+
Sbjct:    1 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVK 173          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5B_MOUSE1.897e-3549.33Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN1.897e-3549.33Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB3_DROME1.897e-3543.04Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB26_RAT1.897e-3547.74Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB19_BOVIN1.897e-3545.28Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RAB3B_MOUSE2.478e-3543.95Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU2.478e-3543.95Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_BOVIN2.478e-3543.95Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB3A_RAT2.478e-3540.46Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG2.478e-3540.46Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
back to top