DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.478e-35
Identity = 70/173 (40.46%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   53 VASTMSNLYGDY---NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +AS   + YG     +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R V +E  ++ A      F E SA +  NV+
Sbjct:    1 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVK 173          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.478e-35
Identity = 70/173 (40.46%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   53 VASTMSNLYGDY---NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +AS   + YG     +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R V +E  ++ A      F E SA +  NV+
Sbjct:    1 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVK 173          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.478e-35
Identity = 70/173 (40.46%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   53 VASTMSNLYGDY---NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +AS   + YG     +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R V +E  ++ A      F E SA +  NV+
Sbjct:    1 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVK 173          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.236e-35
Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            N KI + FK+VL+G++AVGKS L+ RF R  F    ++TIG  F  +T+ ++  TVK +IWDTAGQERY  +   YYRGA  A++VYD+    SF+   +W+ EL+     NIVI L GNK DL + R V T +AQ++A+   L FMETSA  + NV
Sbjct:    4 NNKI-FQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNV 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.236e-35
Identity = 68/158 (43.04%), Postives = 108/158 (68.35%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L GNKCD+   R V TE  Q   ++    F ETSA +  NV+
Sbjct:   24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVK 181          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.236e-35
Identity = 68/158 (43.04%), Postives = 108/158 (68.35%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+  + K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L GNKCD+   R V TE  Q   ++    F ETSA +  NV+
Sbjct:   24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVK 181          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.236e-35
Identity = 68/157 (43.31%), Postives = 108/157 (68.79%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            +Q  DY+FK+++IG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YD+T  +SF+ +  W  +++ ++  N  ++L+GNKCD+   R +PTE  +  A++    F E SA E  +V
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISV 172          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.236e-35
Identity = 74/155 (47.74%), Postives = 104/155 (67.10%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D  FKV+L+GDS VGK+ LL RF    F   +  +T+G++F+ K L +D   VK QIWDTAGQER+R+VT AYYR A   +L+YD+T + SFD++  WL E++ +A +++V+ML+GNK D    R V  ED ++ A+   L FMETSA    NV+
Sbjct:   65 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVD 219          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.236e-35
Identity = 68/154 (44.16%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D +FK++LIGDS VGK+ +L RF+ + F+    +TI ++F+ KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYD+T  +SF+++++WL  +  HA++++  ML+ NKCD+   R VP    ++ A+   + F ETSA    N+E
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIE 160          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.227e-35
Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            +Q  DY+FK++LIG+S+VGK+  L R+A + F+    +T+G++F+ KT+    K +K QIWDTAGQERYR +T+AYYRGA+G +L+YD+  ++SF  +  W  +++ ++  N  ++L+GNKCDL   R V  ED Q  A      F E SA E  NV+
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVK 173          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3A_MOUSE2.478e-3540.46Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA2.478e-3540.46Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN2.478e-3540.46Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB5A_DICDI3.236e-3547.77Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB3C_RAT3.236e-3543.04Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE3.236e-3543.04Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB3B_RAT3.236e-3543.31Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB26_MOUSE3.236e-3547.74Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB10_RAT3.236e-3544.16Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB3D_RAT4.227e-3544.30GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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