CX045923

Overview
NameCX045923
Unique NameCX045923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_GEOSF (Dihydroorotate dehydrogenase OS=Geobacter sp. (strain FRC-32) GN=pyrD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 59/214 (27.57%), Postives = 102/214 (47.66%), Query Frame = 1
Query:  232 AEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILI---ASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            A+PDLS+ ++G+++ NP +  SG  G           E  GA++ K +SL   K  N TPR      G   +     IG +N+ +      +  + E           +++    + +EEY + A  E +DR+ E  +  +EVN SCP+    ++ G   G D     EV G +    + P+  K++PN+TD+   A   + +G++ +S INT+
Sbjct:    2 AKPDLSVEISGIKLRNPVMTASGTFGYGKEFSDYLDLEKIGAIITKGLSL-RPKAGNPTPRIVETPGGMLNA-----IGLQNVGI------DAFIGEKLPFLRTVDTPVIVNLYGNTLEEYGELA--EKLDRLPE--VAGLEVNISCPN---VKQGGIVFGTDPNAAAEVVGLVRRSTSKPLIIKLSPNVTDVVRMADACVNAGADALSLINTL 196          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_AQUAE (Dihydroorotate dehydrogenase OS=Aquifex aeolicus GN=pyrD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 66/214 (30.84%), Postives = 98/214 (45.79%), Query Frame = 1
Query:  241 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYP-----DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 867
            DLS+ + G++  NP  + SG  G      +       GAVV K +SL   ++ N TPR      G   S   Q  G E                 K LK +YP     D   IA++  E  +   E  +   +   I A E+N SCP+    +K G   G D  +L  +   I AK   P+  K++PN+TD+TE A+V + +G++G+  INT+M
Sbjct:    2 DLSVELFGIRFKNPVWVASGTFGYGVEAAEIYDISKLGAVVTKGLSLKE-RLGNETPRIVETPCGMLNSIGLQNPGVE-----------------KFLKEIYPKIKDVDTHFIANVFGETEEEYVEVCMALEDADKIVAYELNVSCPN---VKKGGILFGHDPVILGNLVDRIKAKIKKPLLVKLSPNVTDVTEFAKVCIENGADGLVLINTLM 194          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_THEAC (Dihydroorotate dehydrogenase OS=Thermoplasma acidophilum GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.897e-14
Identity = 59/212 (27.83%), Postives = 106/212 (50.00%), Query Frame = 1
Query:  241 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWE----NIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            DLS +V G+++ NP ++ SG    N   M    + G  AVV K++ ++                  NG +   I+ +     N   +S+  ++   +E +  K     K +I S+    +  ++  L  +++E G DA+E+N SCPH    +  G  VG D  L+E++   + +K +VPV+AK++PN++DI E A+ A +  ++    INT+
Sbjct:    3 DLSTSVAGIRLENPLMLASGILDENGYTMLDVMNNGAAAVVTKSIGMEER----------------NGYSAPVIVEYGDSLINAVGLSNPGIDNFAEEIRIAKR--SGKPVIGSVFAS-DAESFVNLGRKMQEYGCDAVELNLSCPH---VKGFGLEVGSDPDLVEDIVNEMKSKISVPVFAKLSPNVSDIIEIAKAAEK--ADAYVLINTV 190          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_METMA (Dihydroorotate dehydrogenase OS=Methanosarcina mazei GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.518e-13
Identity = 65/208 (31.25%), Postives = 96/208 (46.15%), Query Frame = 1
Query:  244 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGW-GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            L  T+ GL++ NP ++ +G  GT    + R   EG  GAVV K++   A K  +  P    L  G           + N   + +      L+E +  K    D  +IASI      + + E+ + +     DA E+N SCPH       GAA+G +  L+E V   +     VPVW K+TPN+ DIT     A   G++ V AINT+
Sbjct:   13 LMYTLTGLKLKNPTILAAGVLGTTGASLCRVAREGGAGAVVTKSIG-PAPKTGHPNPSMIELDCG-----------FLNAMGLPNPSYPGFLQELEFAKE-NSDAPVIASIFGG-TPSEFAEVAEGLLPAKPDAFELNVSCPHA---EGYGAAIGSNPCLVEAVTAAVKDVVNVPVWVKLTPNVADITCIGNAAESGGADAVVAINTV 203          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_LACH4 (Dihydroorotate dehydrogenase OS=Lactobacillus helveticus (strain DPC 4571) GN=pyrD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.518e-13
Identity = 58/208 (27.88%), Postives = 106/208 (50.96%), Query Frame = 1
Query:  250 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 867
            + + GL + NP +  SG  G       + FD    GA+V KT +  A    N  P+ A L  G   S          + L +    + + ++  +L+  YPD  ++AS+  + ++  + E+  ++  +G ++A+E+N SCP+     + G + G    ++EE+   I     +P++ K+TPN+TDI E A+ A   G++G+S INT++
Sbjct:    6 VNLPGLDLKNPVMPASGTFGFGDVPAAQKFDLNDLGAMVIKTTTPHATTG-NPQPQIAILEDGVLNS----------VGLTNPGVDQVISEKLTKLRHQYPDLPIMASVGGD-SEDDYVEVAKKLSASGLVNALEINVSCPN---VAQGGMSFGVHAGVVEELTKKIKMAVALPIYVKLTPNVTDIVEIAKAAESGGADGISMINTLL 198          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_ALKOO (Dihydroorotate dehydrogenase OS=Alkaliphilus oremlandii (strain OhILAs) GN=pyrD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.982e-13
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 1
Query:  241 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 867
            ++ + + G+Q+ NP +  SG  G+     +       GAVV K V+ +     N TPR A    G   S     +G +N        +E  +K+  Q    Y  KI++   +     A + ++ +++ +  ID IE+N SCP+    +  G   G +  ++EEV   +   A  P+  K+TPN+TDI E A+ A+  G++ +S INT++
Sbjct:    5 NMGVHIAGIQLKNPVMTASGTFGSGREYSEFVDLNQLGAVVVKGVANEPWSG-NPTPRIAETYGGMLNS-----VGLQN------PGVEAFIKDDIQFLRQYDTKIIVN--IAGRTVADYCKVTEKLGDADIDLIELNISCPN---VKAGGVNFGTNPAMVEEVTKAVKKVARQPLIVKLTPNVTDIVEIAKAAVAGGADAISLINTLL 196          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_ANATD (Dihydroorotate dehydrogenase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=pyrD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 62/210 (29.52%), Postives = 106/210 (50.48%), Query Frame = 1
Query:  241 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWEN--IELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            +L + + G+++ NP +  SG  G      K      +GA+  K ++L   ++ N  PR   + AG   S     +G EN  +E   +  L   LK F        D  +IA+I   ++K  + EL  ++  + +D IEVN SCP+    ++ G   G+D + + E+   +   A+ P+  K+TPN+TDIT+ A  A  +G++ +S INT+
Sbjct:    2 NLEVEIAGIKLKNPVIAASGTFGFGREYSKLIDISEFGAICTKGITLKK-RIGNPQPRLCEVYAGIINS-----VGLENPGVEAFINDELP-FLKSF--------DTKIIANI-NGFSKEEFVELT-KILTSLVDMIEVNLSCPN---VKEGGMVFGKDPKKVYEITKSVKDVASCPIIVKLTPNVTDITQLAVAAENAGADAISLINTV 191          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_GEOBB (Dihydroorotate dehydrogenase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 63/210 (30.00%), Postives = 102/210 (48.57%), Query Frame = 1
Query:  238 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKI-LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            PD+S+ V G++M NP +  SG  G           E  GA+++K +SL   K  N TPR      G   +     IG +N+ +  D  +E  L   K +    P  + L  + +EEY + A    +D +  +G+  IEVN SCP+    ++ G   G D    +EV   +    T P+  K++PN+TD+   A+    +G++ +S INT+
Sbjct:    4 PDMSVAVAGIKMRNPVMTASGTFGYGAEFADYLDLECIGAMISKGLSLKP-KAGNPTPRIVETPGGMLNA-----IGLQNVGI--DAFIEQKLPYLKNVNT--PVIVNLYGNTLEEYGEVAAR--LDGL--SGVAGIEVNISCPN---VKQGGIVFGTDPGAAQEVVRLVKKNTTKPMIVKLSPNVTDVVLMAKACADAGADALSLINTL 196          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_GEOSM (Dihydroorotate dehydrogenase OS=Geobacter sp. (strain M21) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 62/210 (29.52%), Postives = 101/210 (48.10%), Query Frame = 1
Query:  238 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKI-LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            PD+S+ V G++M NP +  SG  G           E  GA+++K +SL   K  N TPR      G   +     IG +N+ +  D  +E  L   K +    P  + L  + +EEY + A    +D +   G+  IEVN SCP+    ++ G   G D    +EV   +    + P+  K++PN+TD+   A+    +G++ +S INT+
Sbjct:    4 PDMSVAVAGIKMRNPVMTASGTFGYGAEFADYLDLESIGAMISKGLSLKP-KAGNPTPRIVETPGGMLNA-----IGLQNVGI--DAFIEQKLPYLKNVNT--PVIVNLYGNTLEEYGEVAAR--LDGL--AGVAGIEVNISCPN---VKQGGIVFGTDPGAAQEVVRLVKKNTSKPMIVKLSPNVTDVVVMAKACADAGADALSLINTL 196          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_CLOPH (Dihydroorotate dehydrogenase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=pyrD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.531e-13
Identity = 60/208 (28.85%), Postives = 101/208 (48.56%), Query Frame = 1
Query:  247 SITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWEN--IELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            ++T+ G+   NP    SG  G+     +       GA+  K VS       N  PR A    G   +     IG +N  +++  +R L   LK+F        D  +I ++  +  K  + E+++R+ E  +D +E+N SCP+    ++   A GQD +++  +   I   A  PV  K++PN+TDITE A+ A   G++ +S INT+
Sbjct:    4 NVTIAGVTFKNPVTTASGTFGSGMEYSEFVDLNRLGAITTKGVS-SVPWPGNPVPRIAETYGGMLNA-----IGLQNPGVDMFVERDL-AFLKQF--------DTKVIVNVCGKSVKE-YVEVVERLSEEAVDLLELNISCPN---VKEGCIAFGQDPKMIAMIMDEIKRHAKQPVIVKLSPNVTDITEMAKAAEAGGADALSLINTL 192          
The following BLAST results are available for this feature:
BLAST of CX045923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PYRD_GEOSF6.812e-1427.57Dihydroorotate dehydrogenase OS=Geobacter sp. (str... [more]
PYRD_AQUAE6.812e-1430.84Dihydroorotate dehydrogenase OS=Aquifex aeolicus G... [more]
PYRD_THEAC8.897e-1427.83Dihydroorotate dehydrogenase OS=Thermoplasma acido... [more]
PYRD_METMA1.518e-1331.25Dihydroorotate dehydrogenase OS=Methanosarcina maz... [more]
PYRD_LACH41.518e-1327.88Dihydroorotate dehydrogenase OS=Lactobacillus helv... [more]
PYRD_ALKOO1.982e-1328.23Dihydroorotate dehydrogenase OS=Alkaliphilus oreml... [more]
PYRD_ANATD2.588e-1329.52Dihydroorotate dehydrogenase OS=Anaerocellum therm... [more]
PYRD_GEOBB4.415e-1330.00Dihydroorotate dehydrogenase OS=Geobacter bemidjie... [more]
PYRD_GEOSM5.767e-1329.52Dihydroorotate dehydrogenase OS=Geobacter sp. (str... [more]
PYRD_CLOPH7.531e-1328.85Dihydroorotate dehydrogenase OS=Clostridium phytof... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_4G09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-4G09-M18-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX045923 ID=CX045923; Name=CX045923; organism=Citrus sinensis; type=EST; length=868bp
CGTAAATTATTATTAAGTCGAATTCATAAAGCTTCTCTCTGATCCCAAAA
GAATCTTTAGAACTGAGTGAGATTCAATCTTGTTCATTTCCTTTTATCTC
CATCCATGGCATCATTGAATTTGAATCAGATCATAAGCAACAGCAACACC
TCCTTTGCTGTGAATCGTCGGCCAGGATTGCGCTTGCCTAGTCGAATTGG
GTTGAGGGTTTTGGCTTCTGATTCAGCTTCAGCAGAGCCAGACTTGAGTA
TTACAGTAAATGGACTGCAGATGCCGAACCCGTTTGTTATCGGATCGGGT
CCACCTGGCACCAACTACACTGTCATGAAGCGAGCCTTTGATGAAGGCTG
GGGTGCTGTTGTTGCTAAAACTGTATCATTAGATGCAGCAAAAGTTATAA
ACGTAACTCCTCGATATGCCCGCCTGCGAGCAGGTGCGAATGGATCAGCC
AAAGGGCAAATTATTGGGTGGGAGAACATAGAACTCATTAGCGATCGGCC
GCTTGAAACAATGTTGAAAGAATTTAAACAATTAAAAGCATTGTATCCGG
ATAAGATTCTCATCGCTTCAATTATGGAAGAGTATAACAAAGCTGCATGG
GAGGAGCTTATTGATCGAGTGGAAGAAACAGGAATTGATGCAATAGAAGT
TAATTTTTCATGTCCACATGGCATGCCGGAACGTAAAATGGGGGCTGCTG
TTGGCCAAGATTGTAGGCTGTTGGAAGAAGTTTGTGGTTGGATAAATGCA
AAAGCTACTGTTCCTGTGTGGGCAAAGATGACTCCTAACATTACTGACAT
TACAGAGCCAGCTAGGGTGGCTCTCAGATCAGGAAGTGAGGGAGTATCTG
CTATTAACACAATCATGA
back to top