CX045923

Overview
NameCX045923
Unique NameCX045923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_ALKMQ (Dihydroorotate dehydrogenase OS=Alkaliphilus metalliredigens (strain QYMF) GN=pyrD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.531e-13
Identity = 59/212 (27.83%), Postives = 105/212 (49.53%), Query Frame = 1
Query:  241 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILI---ASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 867
            ++ + + G+++ NP +  SG  G+     +       GAVV K V+ +  K  N +PR A    G   S     +G +N  +  D  +E  +   +Q    Y  KI++      +E+Y      E++ ++ +  +D +E+N SCP+    +  G   G D  ++EEV   +   A  P+  K+TPN+TDI   A+ A+  G++G+S INT++
Sbjct:    5 NMKVNIAGVELKNPVMTASGTFGSGREYGEYVDLNQLGAVVVKGVANEPWKG-NPSPRIAETYGGMLNS-----VGLQNPGV--DEFIEKDIPFLRQ----YNTKIIVNIAGRTIEDYC-----EVVKKLGDADVDLLELNISCPN---VKAGGVCFGTDPFMVEEVTKAVKKVAKQPLIVKLTPNVTDIVPIAKAAVAGGADGISLINTLL 196          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_LACAC (Dihydroorotate dehydrogenase OS=Lactobacillus acidophilus GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 58/208 (27.88%), Postives = 107/208 (51.44%), Query Frame = 1
Query:  250 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 867
            IT+ GL + NP +  SG  G       + FD    GA+V KT +  A    N  P+ A L  G   S          + L +    + + ++   L+  YP+  ++AS+  + +++ + E+  ++ ++  ++A+E+N SCP+     + G + G    ++EE+   I     VP++ K+TPN+TDI   A+ A + G++G+S INT++
Sbjct:    6 ITLPGLDLKNPVMPASGTFGFGDVPAAKKFDLNDLGAMVIKTTTPKATSG-NPQPQIAVLDDGVLNS----------VGLTNPGVDQVISEKLVPLRKQYPNLPIMASVGGD-SESDYVEVAKKLSDSDLVNALEINVSCPN---VAQGGMSFGVHPDVVEELTKKIKDVVDVPIYVKLTPNVTDIVAIAQAAEKGGADGISMINTVL 198          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_LACDB (Dihydroorotate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.678e-12
Identity = 57/208 (27.40%), Postives = 105/208 (50.48%), Query Frame = 1
Query:  250 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 867
            + + GL + NP +  SG  G       + FD    GA+V KT +  A    N  P+ A L  G   S          + L +    + + ++  +L+  Y D  ++AS+  + ++  + E+  ++  +G ++A+E+N SCP+     + G + G    ++EE+   I     +P++ K+TPN+TDI E A+ A   G++G+S INT++
Sbjct:    6 VNLPGLDLKNPVMPASGTFGFGDVPAAQKFDLNDLGAMVIKTTTPHATTG-NPQPQIAILEDGVLNS----------VGLTNPGVDQVISEKLTKLRHQYIDLPIMASVGGD-SEDDYVEVAKKLSASGLVNALEINVSCPN---VAQGGMSFGVHAGVVEELTKKIKMAVALPIYVKLTPNVTDIVEIAKAAESGGADGISMINTVL 198          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_LACDA (Dihydroorotate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.678e-12
Identity = 57/208 (27.40%), Postives = 105/208 (50.48%), Query Frame = 1
Query:  250 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 867
            + + GL + NP +  SG  G       + FD    GA+V KT +  A    N  P+ A L  G   S          + L +    + + ++  +L+  Y D  ++AS+  + ++  + E+  ++  +G ++A+E+N SCP+     + G + G    ++EE+   I     +P++ K+TPN+TDI E A+ A   G++G+S INT++
Sbjct:    6 VNLPGLDLKNPVMPASGTFGFGDVPAAQKFDLNDLGAMVIKTTTPHATTG-NPQPQIAILEDGVLNS----------VGLTNPGVDQVISEKLTKLRHQYLDLPIMASVGGD-SEDDYVEVAKKLSASGLVNALEINVSCPN---VAQGGMSFGVHAGVVEELTKKIKMAVALPIYVKLTPNVTDIVEIAKAAESGGADGISMINTVL 198          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_GEOUR (Dihydroorotate dehydrogenase OS=Geobacter uraniireducens (strain Rf4) GN=pyrD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 59/211 (27.96%), Postives = 102/211 (48.34%), Query Frame = 1
Query:  235 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKI-LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            +PDLS+ V G+++ NP +  SG  G           E  GA++ K +S+   K  N TPR      G   +     IG +N+ +  D  ++  L   + +    P  + L  + +EEY + A  E +D++ E  +  +EVN SCP+    ++ G   G D     EV   +      P+  K++PN+T++ E A   + +G++ +S INT+
Sbjct:    3 KPDLSVEVAGIKLRNPVMTASGTFGYGKEFADYLDLEKIGAIITKGLSI-RPKAGNPTPRIVETPGGMLNA-----IGLQNVGI--DAFIQEKLPFLRTVNT--PVIVNLYGNTLEEYGELA--EKLDKLPE--VAGLEVNISCPN---VKQGGIVFGTDPNAAYEVVSLVRESTIKPLIVKLSPNVTNVVEMANACVDAGADALSLINTL 196          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_PYRKO (Dihydroorotate dehydrogenase OS=Pyrococcus kodakaraensis GN=pyrD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.376e-12
Identity = 61/207 (29.47%), Postives = 92/207 (44.44%), Query Frame = 1
Query:  244 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            LSI ++GL+  NP ++ SG          RA +EG G VV K++ ++  K  +  P    L  G   +      GW+                 + ++    D  LI SI        +  L +++ E   DA E+N SCPH    +  G  +GQ    +  V   +      PV AK+TPNI DIT+    A  +G++ VSAINT+
Sbjct:    6 LSINLSGLEFENPLILASGINDKVPEQWIRAHEEGAGGVVTKSIGIEPRKGYD-NPTIVELPYGLINAMGLPNPGWKGF--------------LEMVEGYSFDFPLIVSIFGG-TPEEFAFLAEKLSEVA-DAFELNLSCPHA---KGYGMEIGQKPENVYAVVKAVKDATDKPVIAKLTPNIDDITKLGLAAENAGADAVSAINTL 192          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_DESAD (Dihydroorotate dehydrogenase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=pyrD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.376e-12
Identity = 65/209 (31.10%), Postives = 98/209 (46.89%), Query Frame = 1
Query:  241 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            D+SI   GL++ NP +  SG  G      +    E  G +V K +SL   +  N  PR A    G   +   Q  G E  E I+ +  +   K    L  LY      A+  EE+ + A         E G+ A+EVN SCP+    ++ G A GQD + + +V   +   A   P+  K++PN+TDIT  A+ A   G++ +S INT+
Sbjct:    2 DVSIDFAGLKLKNPILTASGTFGFGLEFQRYGDLESLGGIVVKGLSLKPREG-NPMPRIAETPCGMLNAIGIQNPGVE--EFINKKLPKLPWKTLPVLANLY------ATDAEEFGELAGV----LAGEEGVAALEVNVSCPN---VKEGGIAFGQDPKQITKVAEAVKKNAGNKPIIIKLSPNVTDITVCAKAAEDGGADALSLINTL 194          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_NATTJ (Dihydroorotate dehydrogenase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.088e-11
Identity = 61/209 (29.19%), Postives = 93/209 (44.50%), Query Frame = 1
Query:  241 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 864
            DL +   G+ M NP    SG  G  +           GA+V K ++L   +    T    RL   A+G      IG EN  +  D  +  +L + +Q  A     I         N   + E+  ++    GI  +EVN SCP+    R+ G   G D  L   +   +    + PV  K++PN+TDITE A+   R+G++G+S INT+
Sbjct:    3 DLKVNFAGIPMKNPVASASGTFGFGFEYQSVISPHELGALVVKGLTLSPKRGNQGT----RLHETASGLLNS--IGLENPGI--DNFINEILPDLRQCDATTLINI------SGGNDEEYVEITQKLNNCQGIAGLEVNISCPN---IREGGLVYGVDPELTYRLVSKVRQSTSFPVIVKLSPNVTDITEIAKACERAGADGLSLINTV 194          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_LISW6 (Dihydroorotate dehydrogenase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 59/209 (28.23%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  244 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 867
            L++ + GL + NP +  SG  G      K       GA++AK V+ +  ++ N TPR A   +G   +   Q  G E++ L  + P    L++F+      P    +A   E+     + E+  R+ E+  + AIE+N SCP+    +  G A G D  +   +   + + A+VPV+ K++PN+ DI   A+    +G++G++ INT++
Sbjct:    4 LAVEIPGLSLKNPIMPASGCFGFGQEYSKYYDLNKLGAIMAKAVTPEP-RLGNPTPRVAETASGMLNAIGLQNPGLEHV-LAHELPF---LEQFET-----PIIANVAGATED----DYVEVCSRIGESKAVKAIELNISCPN---VKHGGIAFGTDPEVAHRLTKAVKSVASVPVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLL 195          
BLAST of CX045923 vs. ExPASy Swiss-Prot
Match: PYRD_BACTN (Dihydroorotate dehydrogenase OS=Bacteroides thetaiotaomicron GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1
Query:  241 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 867
            DLS+ +  LQM NP +  SG  G              G ++ K  +L   +  N  PR A   +G   +     +G +N  +  D  +E +    K ++      +   S +E+Y K A  E+I+ +++  I AIE+N SCP+    ++ G A G   +   EV   + A     +  K++PN+TDITE AR A  SG++ VS INT++
Sbjct:    3 DLSVNIGELQMKNPVMTASGTFGYGEEFSDFIDIARIGGIIVKGTTLHKREG-NPYPRMAETPSGMLNA-----VGLQNKGV--DYFVEQIYPRIKDIQTNMIVNVS-GSAIEDYVKTA--EIINELDK--IPAIELNISCPN---VKQGGMAFGVSAKGASEVVKAVRAAYKKTLIVKLSPNVTDITEIARAAEESGADSVSLINTLL 195          
The following BLAST results are available for this feature:
BLAST of CX045923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PYRD_ALKMQ7.531e-1327.83Dihydroorotate dehydrogenase OS=Alkaliphilus metal... [more]
PYRD_LACAC1.285e-1227.88Dihydroorotate dehydrogenase OS=Lactobacillus acid... [more]
PYRD_LACDB1.678e-1227.40Dihydroorotate dehydrogenase OS=Lactobacillus delb... [more]
PYRD_LACDA1.678e-1227.40Dihydroorotate dehydrogenase OS=Lactobacillus delb... [more]
PYRD_GEOUR3.738e-1227.96Dihydroorotate dehydrogenase OS=Geobacter uraniire... [more]
PYRD_PYRKO6.376e-1229.47Dihydroorotate dehydrogenase OS=Pyrococcus kodakar... [more]
PYRD_DESAD6.376e-1231.10Dihydroorotate dehydrogenase OS=Desulfovibrio sale... [more]
PYRD_NATTJ1.088e-1129.19Dihydroorotate dehydrogenase OS=Natranaerobius the... [more]
PYRD_LISW61.420e-1128.23Dihydroorotate dehydrogenase OS=Listeria welshimer... [more]
PYRD_BACTN1.420e-1130.14Dihydroorotate dehydrogenase OS=Bacteroides thetai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_4G09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-4G09-M18-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX045923 ID=CX045923; Name=CX045923; organism=Citrus sinensis; type=EST; length=868bp
CGTAAATTATTATTAAGTCGAATTCATAAAGCTTCTCTCTGATCCCAAAA
GAATCTTTAGAACTGAGTGAGATTCAATCTTGTTCATTTCCTTTTATCTC
CATCCATGGCATCATTGAATTTGAATCAGATCATAAGCAACAGCAACACC
TCCTTTGCTGTGAATCGTCGGCCAGGATTGCGCTTGCCTAGTCGAATTGG
GTTGAGGGTTTTGGCTTCTGATTCAGCTTCAGCAGAGCCAGACTTGAGTA
TTACAGTAAATGGACTGCAGATGCCGAACCCGTTTGTTATCGGATCGGGT
CCACCTGGCACCAACTACACTGTCATGAAGCGAGCCTTTGATGAAGGCTG
GGGTGCTGTTGTTGCTAAAACTGTATCATTAGATGCAGCAAAAGTTATAA
ACGTAACTCCTCGATATGCCCGCCTGCGAGCAGGTGCGAATGGATCAGCC
AAAGGGCAAATTATTGGGTGGGAGAACATAGAACTCATTAGCGATCGGCC
GCTTGAAACAATGTTGAAAGAATTTAAACAATTAAAAGCATTGTATCCGG
ATAAGATTCTCATCGCTTCAATTATGGAAGAGTATAACAAAGCTGCATGG
GAGGAGCTTATTGATCGAGTGGAAGAAACAGGAATTGATGCAATAGAAGT
TAATTTTTCATGTCCACATGGCATGCCGGAACGTAAAATGGGGGCTGCTG
TTGGCCAAGATTGTAGGCTGTTGGAAGAAGTTTGTGGTTGGATAAATGCA
AAAGCTACTGTTCCTGTGTGGGCAAAGATGACTCCTAACATTACTGACAT
TACAGAGCCAGCTAGGGTGGCTCTCAGATCAGGAAGTGAGGGAGTATCTG
CTATTAACACAATCATGA
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