DN617854

Overview
NameDN617854
Unique NameDN617854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.505e-23
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            F  +   + K YE+V+E   RF  F  NL+ I  TN K  SY LGLN+FAD S +EF    +G+  + +     + +   +    LPE  DWR+ G V+PV+ QG CGSCW FS   ++E       GK + LSEQ+LVDC
Sbjct:   48 FNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDC 188          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.978e-23
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQ-----NCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFTT 626
            F  +   + K Y+SVEE   RF  F +NL  I   N +  SY LGLN+FAD + EEF+   LG A+         +    ++   D LP++ DWR+ G V+PVKDQG CGSCW FST  ++E       G   SLSEQ+L+DC   F +
Sbjct:   51 FESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDITD-LPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCDTTFNS 198          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  234 SVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA---DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAF 620
            S+ E   RF  F  NL  +   N K LSYRLGL +FAD + +E++   LGA        + + +  A   D LPE+ DWR+ G V+ VKDQG CGSCW FST G++E       G  I+LSEQ+LVDC  ++
Sbjct:   65 SLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSLRYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCDTSY 196          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 3
Query:  174 QARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYR-LGLNKFADWSWEEFQRHRLGAAQNCSATT--KGNHKLTADVL---PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 611
            ++++  +F  +  ++ + Y S  E   R++ F  N+D + + N KG S   LGLN FAD + EE+++  LG   N  +     G   L  + L   P++ DWR    V+P+KDQG CGSCW+FSTTGS E A+     K +SLSEQ LVDC+
Sbjct:   29 ESQYRTAFTEWTLKFNRQYSS-SEFSNRYSIFKSNMDYVDNWNSKGDSQTVLGLNNFADITNEEYRKTYLGTRVNAHSYNGYDGREVLNVEDLQTNPKSIDWRTKNAVTPIKDQGQCGSCWSFSTTGSTEGAHALKTKKLVSLSEQNLVDCS 179          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CFAD_DICDI (Counting factor associated protein D OS=Dictyostelium discoideum GN=cfaD PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 61/143 (42.66%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV----LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 611
            F  +  +Y K Y S +E   RF  F     +I + N K  SY+LG+N +AD S +EF  + L   +    +  G   +  D     +P T DWR    V+PVKDQG CGSCWTF +TGSLE       G+ +SLSEQQLVDCA
Sbjct:  225 FKEYKAQYNKEYSSQDEHDERFINFKAARKIIATHNAKESSYKLGMNHYADLSNKEF--NTLVKPKVARPSVTGADSVHDDESLRSIPSTVDWRNQNCVTPVKDQGICGSCWTFGSTGSLEGTNCVTNGELVSLSEQQLVDCA 365          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  153 SVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKG---ISLSEQQLVDCAQAF 620
            S  Q   + ++  +F  + + + + Y S EE   R+  F  N+D +   N KG    LGLN FAD + +E++   LG   + SA      +        T DWR  G V+P+K+QG CG CW+FSTTGS E A+  A G     +SLSEQ L+DC++++
Sbjct:   16 SAKQQFSELQYRNAFTNWMQAHQRTYSS-EEFNARYQIFKSNMDYVHQWNSKGGETVLGLNVFADITNQEYRTTYLGTPFDGSALIGTEEEKIFSTPAPTVDWRAQGAVTPIKNQGQCGGCWSFSTTGSTEGAHFIASGTKKDLVSLSEQNLIDCSKSY 173          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTK----GNHK---LTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            F  F +R+GK Y+  +E   R + F  NL   R       S   G+ KF+D +  EF+R  LG  ++  A  +      H+   L  D LP+  DWR+ G V PVK+QG CGSCW+FS +G+LE A++ A GK   LSEQQ VDC
Sbjct:   48 FLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDC 192          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 63/160 (39.38%), Postives = 85/160 (53.12%), Query Frame = 3
Query:  165 VIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVL--------PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAF 620
            V    ++  SF  + R   K Y   E M  R+  F KN+D + + N KG    LGLN+ AD S EE++ + LG   +      G HK    +         P   DWRE   V+PVKDQG CGSC++FSTTGS+E       GK +SLSEQ ++DC+ +F
Sbjct:   24 VFSHKQYQDSFIDWMRSNNKAYTHKEFMP-RYEEFKKNMDYVHNWNSKGSKTVLGLNQHADLSNEEYRLNYLGTRAHIKLN--GYHKRNLGLRLNRPQFKQPLNVDWREKDAVTPVKDQGQCGSCYSFSTTGSVEGVTAIKTGKLVSLSEQNILDCSSSF 180          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 8.633e-22
Identity = 61/143 (42.66%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLG--AAQNCSATTKGNHKLTADVL---PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            F  +  ++ KIYES++E   RF  F  NL  I  TN K  SY LGLN FAD S +EF++  +G  A          N   T   +   P++ DWR  G V+PVK+QG CGSCW FST  ++E       G  + LSEQ+LVDC
Sbjct:   48 FDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKKNNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDC 190          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.633e-22
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  189 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQ-RHRLGAAQNCSATTKGNH--KLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            + FA F ++YGK+Y+  +E   RF  F +N++  +           G+  F+D + EEF+ R+R GA+   +A  +      +T    P   DWRE G V+PVK QG CGSCW FST G++E  +  A    +SLSEQ LV C
Sbjct:   39 MRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLRKTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSC 181          
The following BLAST results are available for this feature:
BLAST of DN617854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PAPA3_CARPA3.505e-2341.13Caricain OS=Carica papaya PE=1 SV=2[more]
XCP1_ARATH5.978e-2341.61Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
RD21A_ARATH1.332e-2243.94Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSP2_DICDI1.332e-2239.47Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
CFAD_DICDI1.332e-2242.66Counting factor associated protein D OS=Dictyostel... [more]
CYSP4_DICDI2.272e-2236.48Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]
CYSP1_MAIZE2.272e-2241.38Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP3_DICDI6.610e-2239.38Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
PAPA2_CARPA8.633e-2242.66Chymopapain OS=Carica papaya PE=1 SV=2[more]
CYSP_TRYBB8.633e-2238.46Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01M11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617854 ID=DN617854; Name=DN617854; organism=Citrus sinensis; type=EST; length=630bp
AATCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGTCATCTTG
TTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTCGACGA
CTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTTCGAGA
CCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCC
CGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAGATGAA
GCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACCA
ATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGACTGG
AGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAACTGCTC
TGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAA
CGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGT
CACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGC
TTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTG
TAGACTGTGCCCAAGCTTTCACAACCAGGG
back to top