DN617854

Overview
NameDN617854
Unique NameDN617854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  213 RYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQ 614
            +Y K Y   EE  LR A + +N+ +I+  N +      ++ + +NKF D + EEF++         + T        +  LP+ KDWRE G V+PV++QG CGSCW F+  G++E       G    LS Q L+DC++
Sbjct:   35 KYAKSYSPKEEA-LRRAVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSK 171          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 53/142 (37.32%), Postives = 72/142 (50.70%), Query Frame = 3
Query:  210 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCK---GL-SYRLGLNKFADWSWEE----FQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 611
            + Y K Y+   E   R   + KNL  +   N +   G+ SY LG+N   D + EE        R+ +    + T + N       LP++ DWRE G V+ VK QG CG+CW FS  G+LEA      GK +SLS Q LVDC+
Sbjct:   33 KTYSKQYKEENEEVARRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTGEEVISLMGSLRVPSQWQRNVTYRSNSN---QKLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCS 171          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 53/143 (37.06%), Postives = 70/143 (48.95%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            F  F   + K Y S  E   RF  F  NL+ I + N    S +  +NKF+D S +E      G +     QN       N     D  P   DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LSEQQL+DC
Sbjct:   28 FEDFLHNFNKNYSSKSEKLHRFKIFQHNLEEIINKNLNDTSAQYEINKFSDLSKDETISKYTGLSLPLQNQNFCEVVVLNRP--PDKGPLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDC 168          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 53/144 (36.81%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QN-CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            F  F  ++ K Y S  E   RF  F  NL+ I + N    S +  +NKF+D S +E      G +     QN C            D  P   DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LSEQQL+DC
Sbjct:   28 FEEFLHKFNKNYSSESEKLRRFKIFQHNLEEIINKNQNDTSAQYEINKFSDLSKDETISKYTGLSLPLQKQNFCEVVVLDR---PPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDC 168          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.588e-15
Identity = 53/144 (36.81%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QN-CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            F  F  ++ K Y S  E   RF  F  NL+ I + N    + +  +NKFAD S +E      G +     QN C            D  P   DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LSEQQL+DC
Sbjct:   28 FEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNHNDSTAQYEINKFADLSKDETISKYTGLSLPLQTQNFCEVVVLDR---PPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDC 168          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 48/149 (32.21%), Postives = 72/149 (48.32%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN---HKLTADVL--------PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            +  F +++ K Y + ++    F  F +NL  + + N        G+NKF+D     F     G   N   +T  N   ++L   V         PE+ DWR+   V+ VK+QG CGSCW F+  G++E+ Y       I LSEQQL+DC
Sbjct:   33 YENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDC 181          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 52/144 (36.11%), Postives = 72/144 (50.00%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QN-CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            F  F  ++ K Y S  E   RF  F  NL+ I + N    + +  +NKF+D S EE      G +     QN C            D  P   DWR+   V+ VK+QG CG+CW F+T GSLE+ +   + + I+LSEQQ +DC
Sbjct:   28 FEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGLSLPHQTQNFCEVVILDR---PPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDC 168          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  243 EMKLRFATFSKNLDLIRSTNCK---GL-SYRLGLNKFADWSWEEFQRH----RLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 611
            E  +R   + KNL  I   N +   G+ SY +G+N   D + EE   +    R+    N S T K +   T   LP++ DWRE G V+ VK QG CGSCW FS  G+LE       GK +SLS Q LVDC+
Sbjct:   42 EEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEVIGYMGSLRIPRPWNRSGTLKSSSNQT---LPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCS 169          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 51/153 (33.33%), Postives = 65/153 (42.48%), Query Frame = 3
Query:  195 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQN------------CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 617
            F  F   Y K Y   +    RF  F +NL+ I   N    S    +NKF+D S  E      G                C+           D LP+  DWR +  ++ VKDQG CGSCW  +  G+LE  Y       I+LSEQQL+DC  A
Sbjct:   32 FETFIINYNKQYPDTKTKNYRFKIFKQNLEDINEKNKLNDSAIYNINKFSDLSKNELLTKYTGLTSKKPSNMVRSTSNFCNVIHLDAPPDVHDELPQNFDWRVNNKMTSVKDQGACGSCWAHAAVGTLETLYAIKHNYLINLSEQQLIDCDSA 184          
BLAST of DN617854 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14
Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 3
Query:  213 RYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYR----LGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 608
            ++GK Y   EE +L+ A + KN  +I   N + L  R    + +N F D +  EF +   G  +     T          +P+  DWR+ G V+PVK+QGHC S W FS TGSLE    +   + I LSEQ L+DC
Sbjct:   35 KHGKTYNMNEE-RLKRAVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQFLYVPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDC 169          
The following BLAST results are available for this feature:
BLAST of DN617854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
CATJ_MOUSE1.577e-1534.06Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CATS_CANFA2.060e-1537.32Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATV_NPVCD3.513e-1537.06Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATV_NPVAP3.513e-1536.81Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATV_NPVCF4.588e-1536.81Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATV_NPVST7.826e-1532.21Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATV_NPVOP7.826e-1536.11Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATS_RAT7.826e-1540.46Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATV_NPVAH1.022e-1433.33Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
TEST2_RAT1.335e-1436.76Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617854 ID=DN617854; Name=DN617854; organism=Citrus sinensis; type=EST; length=630bp
AATCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGTCATCTTG
TTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTCGACGA
CTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTTCGAGA
CCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCC
CGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAGATGAA
GCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACCA
ATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGACTGG
AGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAACTGCTC
TGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAA
CGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGT
CACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGC
TTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTG
TAGACTGTGCCCAAGCTTTCACAACCAGGG
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