DN617833

Overview
NameDN617833
Unique NameDN617833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = -1
Query:  177 DTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLGLD--LDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDGVTPQTIDMEEKFG 491
            D ++ GF +P  +++LVN W +  + + W  P  F PERFL  +  ++  G +F  +PFG GRR CPG+ LA+ +L + +G L+ + +     G     ID  EK G
Sbjct:  383 DPKLNGFDIPAESKILVNAWWLPNNPAHWKKPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNVELLPPPG--QSKIDTSEKGG 487          
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: CP1A1_FELCA (Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = -1
Query:  156 DTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLGLDLDV-KGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDGVTPQTIDMEEKFGLTLQKAR 491
            DT ++GF +P    V VN W I  D  LW +P  F PERFL  D  + K  + ++I FG G+R C G  +A   ++L L  L+   ++ +  G     +DM   +GLT++ AR
Sbjct:  398 DTSLSGFYIPKERCVFVNQWQINHDQKLWGDPSEFRPERFLTPDGTINKALSEKVILFGLGKRKCIGETIARLEVFLFLAILLQQVEFSVPQGT---KVDMTPIYGLTMKHAR 507          
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: CP1A1_RAT (Cytochrome P450 1A1 OS=Rattus norvegicus GN=Cyp1a1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = -1
Query:  156 DTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLGLD--LDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDGVTPQTIDMEEKFGLTLQKAR 491
            DT + GF +P G  V VN W +  D  LW +P  F PERFL     LD K  + ++I FG G+R C G  +    ++L L  L+   ++ +  G   + +DM   +GLTL+ AR
Sbjct:  397 DTSLNGFYIPKGHCVFVNQWQVNHDQELWGDPNEFRPERFLTSSGTLD-KHLSEKVILFGLGKRKCIGETIGRLEVFLFLAILLQQMEFNVSPG---EKVDMTPAYGLTLKHAR 506          
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: CP1A1_RABIT (Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = -1
Query:  156 DTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLGLDLDV-KGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDGVTPQTIDMEEKFGLTLQKAR 491
            DT + GF +P G  V VN W    D  LW +P +F PERFL     V K    +++ FG G+R C G  +    ++L L +L+   ++ +  G    T+DM   +GLT++ AR
Sbjct:  397 DTSLGGFYIPKGRCVFVNQWQNNHDPELWGDPEAFRPERFLTPSGAVDKALTEKVLLFGLGKRKCIGETIGRLEVFLFLATLLQQVEFSVSPGT---TVDMTPIYGLTMKHAR 506          
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: CP1A2_HUMAN (Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 40/114 (35.09%), Postives = 61/114 (53.51%), Query Frame = -1
Query:  156 DTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLGLDLDV--KGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDGVTPQTIDMEEKFGLTLQKAR 491
            DT + GF +P    V VN W +  D  LW++P  F PERFL  D     K  + +++ FG G+R C G  LA   ++L L  L+   ++ +  GV    +D+   +GLT++ AR
Sbjct:  393 DTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPPGV---KVDLTPIYGLTMKHAR 503          
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: CP1A1_CAVPO (Cytochrome P450 1A1 OS=Cavia porcellus GN=CYP1A1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = -1
Query:  156 DTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLGLDLDV-KGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDGVTPQTIDMEEKFGLTLQKAR 491
            DT + GF +P G  + VN W I  D  LW +P  F PERFL  D  V K  + ++  FG G+R C G  +    ++L L  L+   ++    GV    IDM   +GLT++ +R
Sbjct:  389 DTSLNGFYIPKGCCIFVNQWQINHDQKLWGDPSVFRPERFLSPDGTVDKALSEKVTIFGLGKRRCLGEVIGRWEVFLFLAILLQQLEFSTSPGV---KIDMTPIYGLTMKYSR 498          
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: CP17A_CHICK (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Gallus gallus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = -1
Query:  165 ADTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLGLDLDVKGRNF-----ELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDGVTPQTIDMEEKFGLTLQ 494
            ADT +  + +P GA+V++N W++  D   WD P  F P RF    LD +G++        +PFGAG R+C G  LA   L+L L  ++  F   LE         +E KFG+ LQ
Sbjct:  380 ADTSIGEYSIPKGARVVINLWSVHHDEKEWDKPEEFNPGRF----LDEQGQHIHSPSPSYLPFGAGIRVCLGEVLAKMELFLFLAWVLQRF--TLECPQDQPLPSLEGKFGVVLQ 488          
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: C79B3_ARATH (Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana GN=CYP79B3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = -1
Query:  162 ADTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLG--LDLDVKGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDGVTPQTIDMEEKFGLTLQK 494
            +DT VAG+ +P G+QVL++ + +GR+  +W +P SF PER L    ++ +   +   I F  G+R C    L   +  +ML  L+  F WKL    T   + ME    + L K
Sbjct:  413 SDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVEL-MESSHDMFLSK 524          
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: CP2DF_CANFA (Cytochrome P450 2D15 OS=Canis familiaris GN=CYP2D15 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = -1
Query:  216 DTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLGLDLDVKG---RNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDG 491
            DTEV GF++P G  ++ N  ++ +D  +W  P+ F PE F    LD +G   ++   +PF AGRR+C G PLA   L+L    L+  F + +  G
Sbjct:  384 DTEVQGFLIPKGTTLITNLSSVLKDEKVWKKPFRFYPEHF----LDAQGHFVKHEAFMPFSAGRRVCLGEPLARMELFLFFTCLLQRFSFSVPAG 474          
BLAST of DN617833 vs. ExPASy Swiss-Prot
Match: CP1A2_PONAB (Cytochrome P450 1A2 OS=Pongo abelii GN=CYP1A2 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 40/114 (35.09%), Postives = 61/114 (53.51%), Query Frame = -1
Query:  156 DTEVAGFMVPNGAQVLVNTWAIGRDASLWDNPYSFVPERFLGLDLDV--KGRNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDGVTPQTIDMEEKFGLTLQKAR 491
            DT + GF +P    V VN W +  D  LW++P  F PERFL  D     K  + +++ FG G+R C G  LA   ++L L  L+   ++ +  GV    +D+   +GLT++ AR
Sbjct:  393 DTTLNGFYIPKECCVFVNQWQVNHDPELWEDPSEFWPERFLTTDGTAINKPLSEKVMLFGMGKRRCIGEVLANWEVFLFLAILLQQLEFSVPPGV---KVDLTPIYGLTMKHAR 503          
The following BLAST results are available for this feature:
BLAST of DN617833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
TCMO_MEDSA1.251e-1235.51Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
CP1A1_FELCA1.251e-1236.28Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 ... [more]
CP1A1_RAT2.134e-1236.84Cytochrome P450 1A1 OS=Rattus norvegicus GN=Cyp1a1... [more]
CP1A1_RABIT2.787e-1235.40Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CY... [more]
CP1A2_HUMAN4.754e-1235.09Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1... [more]
CP1A1_CAVPO4.754e-1236.28Cytochrome P450 1A1 OS=Cavia porcellus GN=CYP1A1 P... [more]
CP17A_CHICK4.754e-1236.52Steroid 17-alpha-hydroxylase/17,20 lyase OS=Gallus... [more]
C79B3_ARATH4.754e-1233.63Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana... [more]
CP2DF_CANFA8.108e-1236.84Cytochrome P450 2D15 OS=Canis familiaris GN=CYP2D1... [more]
CP1A2_PONAB8.108e-1235.09Cytochrome P450 1A2 OS=Pongo abelii GN=CYP1A2 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01L24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617833 ID=DN617833; Name=DN617833; organism=Citrus sinensis; type=EST; length=494bp
TCAAAATAGATTTATTCGAATAAGAATAAACATTGTACAAGCATACCGAG
TAAGGACAAAGTCCATGCTACAACCTGGAAATTCATTTCATTATAGCACC
AAAAAAAAAAAAAAAATGCTACTAATTAAATGGCAATAGGAAGAGCACGA
AGGGGCCGAGCCTTCTGCAAGGTGAGACCAAATTTCTCTTCCATATCTAT
GGTCTGTGGAGTAACCCCATCTTCAAGTTTCCAATCAAAAGAATTAATAA
GTGAACCTAACATCAAATATAACATTCTTATTGCCAACGGCAAGCCAGGA
CATATTCGTCGTCCGGCGCCAAACGGTATTAGTTCAAAATTCCGACCTTT
GACATCAAGATCTAACCCCAAGAACCTCTCTGGAACAAAAGAGTATGGGT
TGTCCCATAAGCTAGCATCTCTTCCTATAGCCCATGTGTTGACTAAGACT
TGTGCACCATTTGGCACCATGAATCCGGCAACTTCTGTATCTGC
back to top