DN617778

Overview
NameDN617778
Unique NameDN617778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11791 contig Csv1_Contig11791:486..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.484e-29
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            FNLVL+TNV G GDV +VSIKGS T WQPMSRNWGQNWQSNSYL+GQSLSF V  S+G +V S NV P  W FGQT+ G QF
Sbjct:  170 FNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.684e-28
Identity = 57/83 (68.67%), Postives = 66/83 (79.52%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVL+TNV GAGDV  VS+KGS T+W  +SRNWGQNWQSN+ L GQSLSF V TS+G S  S N+AP NW FGQTY+G+ FR
Sbjct:  175 FNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFR 257          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.036e-27
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVL+TNV GAGD++ VS+KGS+T W  MSRNWGQNWQSN+ L GQSLSF VT S+  S  S+NVAP  W FGQT++G+ FR
Sbjct:  179 FNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFR 261          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.965e-27
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            FNLVL+TNVGGAGDV AVS+KGSR+ WQ MS NWG NWQ+ + L+GQ LSF VT S+G +V S NVAP  WSFGQT++G QF
Sbjct:  167 FNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.179e-27
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRT------RWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            FNLVL+TNVGGAGDV ++++KGS +      RWQPMSRNWGQNWQSN+YL+G++LSF VT  +G S+   +VAP  W FGQT+ GRQF
Sbjct:  172 FNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGWQFGQTFEGRQF 259          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.179e-27
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTR-WQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            FNLVL+TNVGGAGDVHAV++K  R+  WQ +SRNWGQNWQS + L+GQ+LSF VTT +G SVVS N  P  WSFGQT++G QF
Sbjct:  208 FNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQF 290          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.570e-26
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVLITNV GAGD+   S+KGS+T W  ++RNWGQNWQSN+ L GQSLSF VT+S+  +  S+N+AP NW FGQT+ G+ FR
Sbjct:  177 FNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFR 259          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 5.726e-26
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVL+TNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF VT+S+  S  S+N+AP NW FGQT+ G+ FR
Sbjct:  174 FNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNFR 256          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.666e-25
Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVLITNV GAGD+   S+KG+ T W PMSRNWGQNWQSNS L GQ+LSF VT S+  +  S+N AP  W FGQT+ G+ FR
Sbjct:  181 FNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFR 263          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.666e-25
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVLITNV GAGD+   S+KGSRT W  +SRNWGQNWQSN+ L GQ+LSF VT S+  +  S+N+ P NW FGQT+ G+ FR
Sbjct:  174 FNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFR 256          
The following BLAST results are available for this feature:
BLAST of DN617778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXPA2_ORYSJ2.484e-2971.95Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA9_ARATH4.684e-2868.67Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA3_ARATH3.036e-2766.27Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP11_ORYSJ3.965e-2768.29Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA6_ORYSJ5.179e-2762.50Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ5.179e-2767.47Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ARATH2.570e-2662.65Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA6_ARATH5.726e-2662.65Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA7_ORYSJ1.666e-2563.86Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ARATH1.666e-2562.65Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617778 ID=DN617778; Name=DN617778; organism=Citrus sinensis; type=EST; length=551bp
ATTAATTTACCTTACAAAAGCATTAAGGCAATAACAAAATGCTTTCTACT
ATAGCACTTCTCAAATACATTTTATGTATTGGAACCTGCTTTTAAGCAGA
ATTTCTATCACTTCTCTTTTATCTCCCAGCAGCAGCCACTCAAGTCAAAA
GCATGAAAAAACTGCATGCAAACACTCTCATAAATGGTACTGAAGCACAC
AAGGGCCAATTCAGAAATAATTTTGTACGTACCCATATCGCTAGAGCTAA
TTAAAAATACTTAAAGGGTTGCTTGATTTTAACTTAAATTAAGCCTAATA
TCGAAATTGTCTGCCGGTATAAGTCTGCCCAAATGACCAATTAGGAGGGG
CAACATTGTAAGAAACAACACTGTGGCCATTACTTGTGGTCACAACAAAA
GAGAGGCTTTGTCCATTAAGATACGAGTTGCTTTGCCAGTTTTGGCCCCA
GTTTCTCGACATCGGTTGCCATCTAGTCCTTGAACCTTTGATGGATACAG
CATGCACGTCACCAGCTCCTCCCACGTTTGTTATTAGAACTAAATTGAAG
T
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