DN617778

Overview
NameDN617778
Unique NameDN617778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11791 contig Csv1_Contig11791:486..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 9.460e-21
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = -3
Query:  298 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT-GRQFRY 549
            F LVL++NV G+G V +VS+KG  T W  ++RNWG NWQ NS L GQ+LSF VT++ G ++  YNV P  WSFG T+T  +QF Y
Sbjct:  171 FELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWWSFGMTFTSNQQFSY 255          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.235e-20
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = -3
Query:  316 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT 549
            F LVL+TNVGG+G V  + IKGS T W  MSRNWG NWQSN+ L+GQ+LSF V   +G  V + +VAP  WSFG TYT
Sbjct:  168 FELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGATYT 245          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.107e-20
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  307 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQ 549
            F LVLITNV G+G V A+S+KGS+T W P++RNWG NWQ NS L GQ+LSF VT++ G ++   +V P  W FG T+T  Q
Sbjct:  171 FELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWWEFGTTFTSNQ 251          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.107e-20
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = -3
Query:  310 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR 549
            F +VLI NVGGAGD+  V +KG++T W  M +NWGQNW + + L GQ LSF VTTS+G +   +NV P NW FGQT+ GR
Sbjct:  191 FLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDGR 270          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.695e-20
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = -3
Query:  298 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY-TGRQFRY 549
            F LVL+ NV G+G V AVS++G+ T W  MSRNWG NWQS + L GQ LSF VTT+ G  ++  +VAP  W FGQT+ T +QF Y
Sbjct:  171 FELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTFSTSKQFDY 255          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 6.132e-20
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = -3
Query:  307 FNLVLITNVGGAGDVHAVSIKGSR--TRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQ 549
            F LVL+TNV  AG V ++ ++GSR    W  MSRNWG NWQS +YL+GQ LSF VT ++G ++V   V PP+W FGQT+   Q
Sbjct:  178 FELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSWRFGQTFASTQ 260          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.008e-20
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = -3
Query:  319 FNLVLITNVGGAGDVHAVSIKGS-RTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY 549
            FNLV+++NVGGAGDV  +S+KG+ R +W P+ RNWGQ WQ++  L G+SL+F V T +     S++V PP+W FG TY
Sbjct:  185 FNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTY 262          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.046e-19
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = -3
Query:  298 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY-TGRQFRY 549
            F LVL+TN+ G+G + ++S+KGS T W  MSRNWG NWQ  + L GQ+LSF VT++ G ++V  +V P  WSFGQT+ T +QF Y
Sbjct:  165 FELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFSTYQQFDY 249          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.046e-19
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = -3
Query:  319 FNLVLITNVGGAGDVHAVSIKGSRT-RWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY 549
            F LVLI+NV G G++  V IKGS++ +W+ MSRNWG N+QSN+YLNGQSLSF V  S+G    + NV P NW FGQ++
Sbjct:  172 FELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWRFGQSF 249          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = -3
Query:  310 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR 549
            F +VLI NVGGAGD+  V +K ++T W  M +NWGQNW +++ L GQ LSF VTT++G +   +NV P NW FGQT+ G+
Sbjct:  197 FLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDGK 276          
The following BLAST results are available for this feature:
BLAST of DN617778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXP25_ORYSJ9.460e-2154.12Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ1.235e-2060.26Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP28_ORYSJ2.107e-2055.56Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH2.107e-2056.25Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP27_ORYSJ4.695e-2055.29Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP29_ORYSJ6.132e-2053.01Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ8.008e-2052.56Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ1.046e-1952.94Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH1.046e-1957.69Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP26_ARATH3.043e-1952.50Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617778 ID=DN617778; Name=DN617778; organism=Citrus sinensis; type=EST; length=551bp
ATTAATTTACCTTACAAAAGCATTAAGGCAATAACAAAATGCTTTCTACT
ATAGCACTTCTCAAATACATTTTATGTATTGGAACCTGCTTTTAAGCAGA
ATTTCTATCACTTCTCTTTTATCTCCCAGCAGCAGCCACTCAAGTCAAAA
GCATGAAAAAACTGCATGCAAACACTCTCATAAATGGTACTGAAGCACAC
AAGGGCCAATTCAGAAATAATTTTGTACGTACCCATATCGCTAGAGCTAA
TTAAAAATACTTAAAGGGTTGCTTGATTTTAACTTAAATTAAGCCTAATA
TCGAAATTGTCTGCCGGTATAAGTCTGCCCAAATGACCAATTAGGAGGGG
CAACATTGTAAGAAACAACACTGTGGCCATTACTTGTGGTCACAACAAAA
GAGAGGCTTTGTCCATTAAGATACGAGTTGCTTTGCCAGTTTTGGCCCCA
GTTTCTCGACATCGGTTGCCATCTAGTCCTTGAACCTTTGATGGATACAG
CATGCACGTCACCAGCTCCTCCCACGTTTGTTATTAGAACTAAATTGAAG
T
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