DN617775
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1) HSP 1 Score: 337.421 bits (864), Expect = 3.845e-92 Identity = 163/217 (75.12%), Postives = 176/217 (81.11%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFPT 653 +IAVKCG+TA WDKWG RIP+S+L+VDDNIVSQVKT EKEG F+LQ+GCGQKK KH++K VGHFRAQGVPLKRKLREFPVTEDALLP+GTSLGVRHF+PGQYVD+ R GF GMPASHGASLSHRS GSTGQRDAPGKVF QRTVKNVWVYKIDPARNLMWVRGQVPGA GNFVFIKDA KKPD+ LPFPT Sbjct: 79 IIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFPT 295
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis GN=rplC PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.638e-42 Identity = 92/204 (45.10%), Postives = 125/204 (61.27%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 +IA K G+T + + G +PV+VL ++D V VK +++G+ ++Q+G G K K++TKP GHF V LK KL EFPV+EDA+L +GTS+ HFI GQ VDI RWGF G+ A+HG SLSHRS GSTG R PG+VF QRT +N+ V D R+L++VRG VPG+ G ++ I+DAV Sbjct: 5 VIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNVTKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVISTDAERDLIFVRGSVPGSKGAWLIIRDAV 208
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplC PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.062e-41 Identity = 84/204 (41.18%), Postives = 126/204 (61.76%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 +IA K G+T + + G +PV+VL +++ V V+T E++G+ +LQ+G G+ K K++ KP+ HF VPLK ++ EF V +DALL +G+++ HF+PGQYVDI RWGF GM A+HG S+SHR+ GSTG R PG+VF QRT +N+ V + D R L++V+G VPG+ ++ ++DAV Sbjct: 5 VIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNVAKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRTDDERGLIFVKGSVPGSKNAWLLVRDAV 208
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_METS4 (50S ribosomal protein L3 OS=Methylobacterium sp. (strain 4-46) GN=rplC PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.089e-41 Identity = 90/207 (43.48%), Postives = 121/207 (58.45%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623 +IA K G+T + G +PV+VL VD V +T EK G+ +LQVG G+ K K+++K E G F V KRKL EF VTEDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T +N+ V + DP R L+ V G VPG +G ++ I+DAV +K Sbjct: 5 VIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVVAHRTVEKNGYVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIRDAVKRK 211
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_METNO (50S ribosomal protein L3 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplC PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.089e-41 Identity = 89/207 (43.00%), Postives = 121/207 (58.45%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623 +IA K G+T + G +PV+VL VD V +T EK G+ +LQVG G+ K K+++K E G F V KRKL EF V+EDAL+P+G + HFIPGQ+VD+ RW F G+ ASHG S+SHRS+GSTG R PGK F + T +N+ V + DP R L+ V G VPG +G ++ ++DAV +K Sbjct: 5 VIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVVAHRTVEKNGYVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGITTGKGFAGGMKRWNFGGLRASHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIHVRDAVKRK 211
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_GRABC (50S ribosomal protein L3 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplC PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.533e-40 Identity = 87/207 (42.03%), Postives = 119/207 (57.49%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623 LIA K G+T + + G +PV+VL +D V +T E++G+ ++Q+G GQ K KH++K GHF V K+KL EF V EDA+L G +L HF+ GQ VD+ RW F G+ ASHG S+SHRS GSTG R PGK F + T +NV V +D AR L+ +RG +PGA G +V ++DAV +K Sbjct: 5 LIARKLGMTRLFKEDGTHVPVTVLHLDQVQVVDTRTKERDGYTAVQLGFGQAKPKHVSKANKGHFARVKVEPKKKLVEFRVAEDAILEPGATLSAEHFLVGQKVDVTGTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGNRQDPGKTFKNKKMAGHLGDERVTTQNVEVAHVDAARGLLMIRGSIPGAKGGYVLVRDAVKRK 211
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_METRJ (50S ribosomal protein L3 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplC PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 3.416e-40 Identity = 87/207 (42.03%), Postives = 120/207 (57.97%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623 +IA K G+T + G +PV+VL +D V +T EK G+ +LQVG G+ K K+++ E G F V K+KL EF VTEDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T +N+ V + DP R L+ V G VPG +G ++ I+DAV +K Sbjct: 5 VIAQKVGMTRVFTDAGEHVPVTVLKIDQCQVVAHRTVEKNGYVALQVGVGKAKVKNVSAAERGRFAVAKVEPKKKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGIKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIRDAVKRK 211
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_MAGSA (50S ribosomal protein L3 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplC PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 3.416e-40 Identity = 92/217 (42.40%), Postives = 126/217 (58.06%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PDVXLLPFP 650 LIA K G+T + + G +PV+VL VD V ++ EK+G+ ++Q+G G K K+++KP +F V K+KL EF V + LL +GT L HFIPGQYVD+ RW F+G+ A+HG S+SHRS GSTGQR PGKVF Q T +N+ V D R L+ V+G VPG G++V ++DAV +K PD +PFP Sbjct: 5 LIAQKVGMTRIFTEDGTHVPVTVLKVDTCQVVSTRSVEKDGYVAVQLGAGTAKVKNVSKPARANFAKAKVEPKKKLVEFRVAPENLLEVGTELSAAHFIPGQYVDVTGTTIGKGFAGGMKRWNFRGLEATHGVSVSHRSHGSTGQRQDPGKVFKGKKMAGHMGDEQVTTQNLTVVSTDADRGLILVKGSVPGHEGSWVLVRDAVKRKLPDG--VPFP 219
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ERYLH (50S ribosomal protein L3 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 5.826e-40 Identity = 92/217 (42.40%), Postives = 127/217 (58.53%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVT-EDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFP 650 +IA K G+T + + G +PV+VL ++D V +T E++G+F+LQVG G K K++ KP+ F V LK K+ EF V ED LLP+G ++ HFI GQ VDI RWGF G+ A+HG S+SHRS GSTG R PG+VF QRT +N+ V + DP R L++V+G VPG +++ I+DAV K P +PFP Sbjct: 5 VIAKKVGMTRLFQEDGRHVPVTVLALEDCQVVSQRTQERDGYFALQVGSGVAKQKNVAKPQREAFAKAEVGLKMKVAEFRVEGEDGLLPVGAAISAEHFIAGQKVDITGYTQGKGFAGAMKRWGFGGLRATHGVSISHRSHGSTGNRQDPGRVFKGKKMAGHMGDRQRTQQNLEVVRTDPERGLIFVKGSVPGTKNSWMLIRDAV-KLPLPEGVPFP 220
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_METPB (50S ribosomal protein L3 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplC PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.695e-39 Identity = 84/207 (40.58%), Postives = 122/207 (58.94%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623 +IA K G+T + G +PV+VL +D V +T EK+G+ +LQVG G+ K K++++ E G F V K+KL EF V+EDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T +N+ V + DP R L+ V G VPG +G ++ ++D+V +K Sbjct: 5 VIARKVGMTRVFTDAGEHVPVTVLQIDQCQVVAHRTTEKDGYVALQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLKVVRTDPERGLILVEGAVPGVAGGWIQVRDSVKRK 211 The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bpback to top |