DN617775
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO7I (50S ribosomal protein L3 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO5E (50S ribosomal protein L3 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO57 (50S ribosomal protein L3 OS=Escherichia coli O157:H7 GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO55 (50S ribosomal protein L3 OS=Escherichia coli (strain 55989 / EAEC) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO45 (50S ribosomal protein L3 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO27 (50S ribosomal protein L3 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO24 (50S ribosomal protein L3 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_VIBFM (50S ribosomal protein L3 OS=Vibrio fischeri (strain MJ11) GN=rplC PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32 Identity = 76/204 (37.25%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N VSQVKT E +G+ ++QV CG KK ++KPE GHF GV R L EF + +G L V F + VD+ RW F+ +HG SLSHR+ GS GQ PG+VF + T +N+ + ++D RNL+ ++G VPG++G V +K AV Sbjct: 4 LVGRKVGMTRIFTEEGVSIPVTVVEVEANRVSQVKTVETDGYNAIQVTCGSKKANRVSKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGAELTVEVFNEIKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGSTGGNVIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_OCHA4 (50S ribosomal protein L3 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplC PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32 Identity = 77/204 (37.75%), Postives = 111/204 (54.41%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 +IA K G+T ++ G +PV+VL +++ V +T EK G+ ++Q+G G K K+ +K GHF V K K+ EF V+ D LL +G + HF+ GQ VD+ R F G ASHG S++HR+ GSTGQR PGKVF + T +N+ V D R L+ VRG VPG+ G ++ ++DAV Sbjct: 5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGLAKVKNTSKAMRGHFAKAEVEPKAKVAEFRVSPDNLLEVGAEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFAGHRASHGNSITHRAHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWIIVRDAV 208
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BARQU (50S ribosomal protein L3 OS=Bartonella quintana GN=rplC PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32 Identity = 81/216 (37.50%), Postives = 118/216 (54.63%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFP 650 +IA K G+T ++ G +PV+VL +++ V +T EK G+ ++Q+G G K K+ ++ GHF V K K+ EF V+ D LL IGT + +HF+PGQ VD+ R F G ASHG S++HR+ GSTGQ PGKVF + T +N+ V D R L+ VRG V G+ G ++ ++DAV K+P +P P Sbjct: 5 VIAQKLGMTRVYNDAGEHVPVTVLRLENCQVIAQRTIEKNGYTAVQLGVGFAKVKNTSRALRGHFAKVSVEPKAKIAEFRVSPDNLLDIGTEITAQHFVPGQRVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKGKKMAGHMGQVRVTTQNIEVVSTDVERGLILVRGAVSGSKGAWILVRDAV-KRPLPDNVPRP 219 The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bpback to top |