DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO7I (50S ribosomal protein L3 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO5E (50S ribosomal protein L3 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO57 (50S ribosomal protein L3 OS=Escherichia coli O157:H7 GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO55 (50S ribosomal protein L3 OS=Escherichia coli (strain 55989 / EAEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO45 (50S ribosomal protein L3 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO27 (50S ribosomal protein L3 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ECO24 (50S ribosomal protein L3 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_VIBFM (50S ribosomal protein L3 OS=Vibrio fischeri (strain MJ11) GN=rplC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 76/204 (37.25%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N VSQVKT E +G+ ++QV CG KK   ++KPE GHF   GV   R L EF +       +G  L V  F   + VD+              RW F+    +HG SLSHR+ GS GQ   PG+VF            + T +N+ + ++D  RNL+ ++G VPG++G  V +K AV
Sbjct:    4 LVGRKVGMTRIFTEEGVSIPVTVVEVEANRVSQVKTVETDGYNAIQVTCGSKKANRVSKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGAELTVEVFNEIKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGSTGGNVIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_OCHA4 (50S ribosomal protein L3 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 77/204 (37.75%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K K+ EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HR+ GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGLAKVKNTSKAMRGHFAKAEVEPKAKVAEFRVSPDNLLEVGAEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFAGHRASHGNSITHRAHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWIIVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BARQU (50S ribosomal protein L3 OS=Bartonella quintana GN=rplC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 81/216 (37.50%), Postives = 118/216 (54.63%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFP 650
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ ++   GHF    V  K K+ EF V+ D LL IGT +  +HF+PGQ VD+              R  F G  ASHG S++HR+ GSTGQ   PGKVF            + T +N+ V   D  R L+ VRG V G+ G ++ ++DAV K+P    +P P
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRLENCQVIAQRTIEKNGYTAVQLGVGFAKVKNTSRALRGHFAKVSVEPKAKIAEFRVSPDNLLDIGTEITAQHFVPGQRVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKGKKMAGHMGQVRVTTQNIEVVSTDVERGLILVRGAVSGSKGAWILVRDAV-KRPLPDNVPRP 219          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_ECO7I3.424e-3238.2450S ribosomal protein L3 OS=Escherichia coli O7:K1... [more]
RL3_ECO5E3.424e-3238.2450S ribosomal protein L3 OS=Escherichia coli O157:... [more]
RL3_ECO573.424e-3238.2450S ribosomal protein L3 OS=Escherichia coli O157:... [more]
RL3_ECO553.424e-3238.2450S ribosomal protein L3 OS=Escherichia coli (stra... [more]
RL3_ECO453.424e-3238.2450S ribosomal protein L3 OS=Escherichia coli O45:K... [more]
RL3_ECO273.424e-3238.2450S ribosomal protein L3 OS=Escherichia coli O127:... [more]
RL3_ECO243.424e-3238.2450S ribosomal protein L3 OS=Escherichia coli O139:... [more]
RL3_VIBFM5.840e-3237.2550S ribosomal protein L3 OS=Vibrio fischeri (strai... [more]
RL3_OCHA45.840e-3237.7550S ribosomal protein L3 OS=Ochrobactrum anthropi ... [more]
RL3_BARQU5.840e-3237.5050S ribosomal protein L3 OS=Bartonella quintana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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