DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_AGRVS (50S ribosomal protein L3 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 77/204 (37.75%), Postives = 114/204 (55.88%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +D+  V   +T +K G+ ++Q+G GQ K K+ +K   G+F A  V  K KL EF V+ED L+ +G+ L   HF  GQ VD+              R  F G+ A+HG S+SHRS GSTG    PGKV+            + T +N+ V   D  R L+ V+G VPG+ G+++ ++DAV
Sbjct:    5 VIAQKVGMTRVYNDAGEHVPVTVLRLDNCQVLAQRTVDKHGYTAVQLGAGQAKVKNTSKAMRGNFAAANVEPKAKLVEFRVSEDNLMDVGSELKAGHFEAGQLVDVTGTTIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGKVWKGKRMAGHMGQTRVTTQNLEVVSTDEDRGLILVKGAVPGSKGSWIIVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_THEP3 (50S ribosomal protein L3 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 77/207 (37.20%), Postives = 113/207 (54.59%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            ++  K G+T  +D+ G  IPV+V+     +V Q KT E +G+ ++QVG G  K+K +TKP +GHF+  GVP KR LREF + + +   +G+ + V  F PG  VD+              R+G    P SHG S  HR +GS G    PG+ F            + T++N+ V K+DP  NL+ V+G VPG  G+ + IKD+V  K
Sbjct:    5 ILGRKHGMTQIFDEKGEVIPVTVIEAGPCVVVQKKTVETDGYNAIQVGFGDVKEKRLTKPLIGHFKKAGVPFKRYLREFRLDDISGYEVGSEIKVDIFKPGDRVDVTGISKGKGFAGVVKRYGANRGPMSHG-SKYHRRVGSMGATTDPGRTFKGKIMPGHMGHERVTIQNLEVVKVDPELNLLLVKGSVPGPKGSLLIIKDSVKSK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICTY (50S ribosomal protein L3 OS=Rickettsia typhi GN=rplC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 76/206 (36.89%), Postives = 114/206 (55.34%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VD   V   KT  K G+ +L +G   +K   +TKP    F    +  K KL+EF ++ED  + I + L V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ ID  R L+ ++G +PG   +++ +KDA+ K
Sbjct:    5 IIAQKIGMTSVFNDKGERISLTLVKVDGCQVVGHKTLAKHGYNALVIGVKDQKISRVTKPMKQVFANAKISPKTKLKEFRISEDNFIDIASILEVDHFSVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAIDTNRKLIMIQGSIPGHKNSYLLVKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICPR (50S ribosomal protein L3 OS=Rickettsia prowazekii GN=rplC PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 75/206 (36.41%), Postives = 115/206 (55.83%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VDD  V   KT  K G+ +L +G   +K   +TKP    F    +  K KL+EF ++ED  + I + L V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            + T++N+ ++ +D  R L+ ++G +PG   +++ +KDA+ K
Sbjct:    5 IIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLAKHGYNALVIGVKDQKISKVTKPMKQVFANAKIAPKTKLKEFRISEDNFIDIASILEVDHFRVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNKVTIQNLKIFAVDTNRKLIMIQGSIPGHKNSYLLVKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPY (50S ribosomal protein L3 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPS (50S ribosomal protein L3 OS=Yersinia pseudotuberculosis GN=rplC PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPP (50S ribosomal protein L3 OS=Yersinia pestis (strain Pestoides F) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPN (50S ribosomal protein L3 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPG (50S ribosomal protein L3 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPE (50S ribosomal protein L3 OS=Yersinia pestis GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_AGRVS5.840e-3237.7550S ribosomal protein L3 OS=Agrobacterium vitis (s... [more]
RL3_THEP37.627e-3237.2050S ribosomal protein L3 OS=Thermoanaerobacter pse... [more]
RL3_RICTY7.627e-3236.8950S ribosomal protein L3 OS=Rickettsia typhi GN=rp... [more]
RL3_RICPR7.627e-3236.4150S ribosomal protein L3 OS=Rickettsia prowazekii ... [more]
RL3_YERPY9.961e-3237.7550S ribosomal protein L3 OS=Yersinia pseudotubercu... [more]
RL3_YERPS9.961e-3237.7550S ribosomal protein L3 OS=Yersinia pseudotubercu... [more]
RL3_YERPP9.961e-3237.7550S ribosomal protein L3 OS=Yersinia pestis (strai... [more]
RL3_YERPN9.961e-3237.7550S ribosomal protein L3 OS=Yersinia pestis bv. An... [more]
RL3_YERPG9.961e-3237.7550S ribosomal protein L3 OS=Yersinia pestis bv. An... [more]
RL3_YERPE9.961e-3237.7550S ribosomal protein L3 OS=Yersinia pestis GN=rpl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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