DN617775
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_AGRVS (50S ribosomal protein L3 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplC PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32 Identity = 77/204 (37.75%), Postives = 114/204 (55.88%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 +IA K G+T ++ G +PV+VL +D+ V +T +K G+ ++Q+G GQ K K+ +K G+F A V K KL EF V+ED L+ +G+ L HF GQ VD+ R F G+ A+HG S+SHRS GSTG PGKV+ + T +N+ V D R L+ V+G VPG+ G+++ ++DAV Sbjct: 5 VIAQKVGMTRVYNDAGEHVPVTVLRLDNCQVLAQRTVDKHGYTAVQLGAGQAKVKNTSKAMRGNFAAANVEPKAKLVEFRVSEDNLMDVGSELKAGHFEAGQLVDVTGTTIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGKVWKGKRMAGHMGQTRVTTQNLEVVSTDEDRGLILVKGAVPGSKGSWIIVRDAV 208
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_THEP3 (50S ribosomal protein L3 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplC PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 77/207 (37.20%), Postives = 113/207 (54.59%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623 ++ K G+T +D+ G IPV+V+ +V Q KT E +G+ ++QVG G K+K +TKP +GHF+ GVP KR LREF + + + +G+ + V F PG VD+ R+G P SHG S HR +GS G PG+ F + T++N+ V K+DP NL+ V+G VPG G+ + IKD+V K Sbjct: 5 ILGRKHGMTQIFDEKGEVIPVTVIEAGPCVVVQKKTVETDGYNAIQVGFGDVKEKRLTKPLIGHFKKAGVPFKRYLREFRLDDISGYEVGSEIKVDIFKPGDRVDVTGISKGKGFAGVVKRYGANRGPMSHG-SKYHRRVGSMGATTDPGRTFKGKIMPGHMGHERVTIQNLEVVKVDPELNLLLVKGSVPGPKGSLLIIKDSVKSK 210
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICTY (50S ribosomal protein L3 OS=Rickettsia typhi GN=rplC PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 76/206 (36.89%), Postives = 114/206 (55.34%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620 +IA K G+T+ ++ G RI ++++ VD V KT K G+ +L +G +K +TKP F + K KL+EF ++ED + I + L V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF Q T++N+ ++ ID R L+ ++G +PG +++ +KDA+ K Sbjct: 5 IIAQKIGMTSVFNDKGERISLTLVKVDGCQVVGHKTLAKHGYNALVIGVKDQKISRVTKPMKQVFANAKISPKTKLKEFRISEDNFIDIASILEVDHFSVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAIDTNRKLIMIQGSIPGHKNSYLLVKDAIKK 210
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICPR (50S ribosomal protein L3 OS=Rickettsia prowazekii GN=rplC PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 75/206 (36.41%), Postives = 115/206 (55.83%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620 +IA K G+T+ ++ G RI ++++ VDD V KT K G+ +L +G +K +TKP F + K KL+EF ++ED + I + L V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF + T++N+ ++ +D R L+ ++G +PG +++ +KDA+ K Sbjct: 5 IIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLAKHGYNALVIGVKDQKISKVTKPMKQVFANAKIAPKTKLKEFRISEDNFIDIASILEVDHFRVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNKVTIQNLKIFAVDTNRKLIMIQGSIPGHKNSYLLVKDAIKK 210
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPY (50S ribosomal protein L3 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPS (50S ribosomal protein L3 OS=Yersinia pseudotuberculosis GN=rplC PE=3 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPP (50S ribosomal protein L3 OS=Yersinia pestis (strain Pestoides F) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPN (50S ribosomal protein L3 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPG (50S ribosomal protein L3 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPE (50S ribosomal protein L3 OS=Yersinia pestis GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207 The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bpback to top |