DN617775
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPB (50S ribosomal protein L3 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPA (50S ribosomal protein L3 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERP3 (50S ribosomal protein L3 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERE8 (50S ribosomal protein L3 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK+ E +G+ ++QV G KK +TKPE GHF GV R L EF + E G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHLGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_SODGM (50S ribosomal protein L3 OS=Sodalis glossinidius (strain morsitans) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 LI K G+T + + G IPV+V+ ++ N V+QVK E +G+ ++QV G KK + KPE GHF GV R L EF V + + +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 4 LIGRKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKDLENDGYRAIQVTAGTKKANRVIKPEAGHFAKAGVEAGRGLWEFRVEDGEEVTVGQSITVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDVERNLLLVKGAVPGATGGDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_PARL1 (50S ribosomal protein L3 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/207 (37.20%), Postives = 113/207 (54.59%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623 +I K G+T + + G +PV+VL +D+ V +T EK G+ ++Q+G G+ K K++ + G F V K +L EF V+ D LL +G + HFI GQYVD+ R F G+ A+HG S+SHRS GSTGQ PGKVF + T +N+ V + D + L+ V+G VPG+ G +V ++DAV K Sbjct: 5 VIVKKVGMTRLFMEDGRHVPVTVLKLDNCQVVSQRTDEKNGYTAVQLGTGRAKAKNVANAQRGQFARASVEPKLELVEFRVSPDNLLDVGVEITADHFIAGQYVDVSGTSIGKGFAGVMKRHNFGGLRATHGVSVSHRSHGSTGQNQDPGKVFKGKKMAGHMGATRVTTQNLEVVRTDADKGLIMVKGAVPGSKGGWVLVRDAVKTK 211
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ENTS8 (50S ribosomal protein L3 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + + +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEEGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLADGEEYTVGQSISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ENT38 (50S ribosomal protein L3 OS=Enterobacter sp. (strain 638) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G + V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGSKKASRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQDISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSNLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ALISL (50S ribosomal protein L3 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32 Identity = 76/204 (37.25%), Postives = 108/204 (52.94%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N VSQVKT E +G+ ++QV CG KK ++KPE GHF GV R L EF + +G L V F + VD+ RW F +HG SLSHR+ GS GQ PG+VF + T +N+ + ++D RNL+ ++G VPG++G V +K AV Sbjct: 4 LVGRKVGMTRIFTEEGVSIPVTVVEVEVNRVSQVKTVETDGYNAIQVTCGSKKANRVSKPEAGHFAKAGVEAGRGLWEFRLENGEEFTVGAELSVEIFNEIKKVDVTGTSKGKGFQGAIKRWNFATQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERCTTQNLEIVRVDAERNLLLIKGAVPGSTGGNVIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_HAMD5 (50S ribosomal protein L3 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplC PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31 Identity = 77/205 (37.56%), Postives = 109/205 (53.17%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTE-DALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + K G IPV+V+ + N V+Q+K + +G+ +LQ+ G KK + KP+ GHF V R L EF V+E DA + +G + V F PG VD+ RW F+ ASHG SLSHR GS GQ PGKVF + T++N+ V ++D R ++ ++G VPGA G V +K AV Sbjct: 4 LVGKKLGMTRIFTKDGISIPVTVIEIKANRVTQIKNLDSDGYLALQITTGTKKASRVNKPKAGHFAKANVEAGRGLWEFRVSEQDATVFLGHTFEVSMFKPGDIVDVTGKSKGKGFSGTVKRWNFRTQDASHGNSLSHRVPGSIGQNQTPGKVFKGKKMSGQLGNERVTIQNLEVVRVDVVREILLIKGGVPGAVGKDVIVKLAV 208 The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bpback to top |