DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPB (50S ribosomal protein L3 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERPA (50S ribosomal protein L3 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERP3 (50S ribosomal protein L3 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_YERE8 (50S ribosomal protein L3 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHLGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_SODGM (50S ribosomal protein L3 OS=Sodalis glossinidius (strain morsitans) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            LI  K G+T  + + G  IPV+V+ ++ N V+QVK  E +G+ ++QV  G KK   + KPE GHF   GV   R L EF V +   + +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LIGRKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKDLENDGYRAIQVTAGTKKANRVIKPEAGHFAKAGVEAGRGLWEFRVEDGEEVTVGQSITVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDVERNLLLVKGAVPGATGGDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_PARL1 (50S ribosomal protein L3 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/207 (37.20%), Postives = 113/207 (54.59%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            +I  K G+T  + + G  +PV+VL +D+  V   +T EK G+ ++Q+G G+ K K++   + G F    V  K +L EF V+ D LL +G  +   HFI GQYVD+              R  F G+ A+HG S+SHRS GSTGQ   PGKVF            + T +N+ V + D  + L+ V+G VPG+ G +V ++DAV  K
Sbjct:    5 VIVKKVGMTRLFMEDGRHVPVTVLKLDNCQVVSQRTDEKNGYTAVQLGTGRAKAKNVANAQRGQFARASVEPKLELVEFRVSPDNLLDVGVEITADHFIAGQYVDVSGTSIGKGFAGVMKRHNFGGLRATHGVSVSHRSHGSTGQNQDPGKVFKGKKMAGHMGATRVTTQNLEVVRTDADKGLIMVKGAVPGSKGGWVLVRDAVKTK 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ENTS8 (50S ribosomal protein L3 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + +     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEEGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLADGEEYTVGQSISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ENT38 (50S ribosomal protein L3 OS=Enterobacter sp. (strain 638) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 77/204 (37.75%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGSKKASRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQDISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ALISL (50S ribosomal protein L3 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 76/204 (37.25%), Postives = 108/204 (52.94%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N VSQVKT E +G+ ++QV CG KK   ++KPE GHF   GV   R L EF +       +G  L V  F   + VD+              RW F     +HG SLSHR+ GS GQ   PG+VF            + T +N+ + ++D  RNL+ ++G VPG++G  V +K AV
Sbjct:    4 LVGRKVGMTRIFTEEGVSIPVTVVEVEVNRVSQVKTVETDGYNAIQVTCGSKKANRVSKPEAGHFAKAGVEAGRGLWEFRLENGEEFTVGAELSVEIFNEIKKVDVTGTSKGKGFQGAIKRWNFATQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERCTTQNLEIVRVDAERNLLLIKGAVPGSTGGNVIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_HAMD5 (50S ribosomal protein L3 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31
Identity = 77/205 (37.56%), Postives = 109/205 (53.17%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTE-DALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + K G  IPV+V+ +  N V+Q+K  + +G+ +LQ+  G KK   + KP+ GHF    V   R L EF V+E DA + +G +  V  F PG  VD+              RW F+   ASHG SLSHR  GS GQ   PGKVF            + T++N+ V ++D  R ++ ++G VPGA G  V +K AV
Sbjct:    4 LVGKKLGMTRIFTKDGISIPVTVIEIKANRVTQIKNLDSDGYLALQITTGTKKASRVNKPKAGHFAKANVEAGRGLWEFRVSEQDATVFLGHTFEVSMFKPGDIVDVTGKSKGKGFSGTVKRWNFRTQDASHGNSLSHRVPGSIGQNQTPGKVFKGKKMSGQLGNERVTIQNLEVVRVDVVREILLIKGGVPGAVGKDVIVKLAV 208          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_YERPB9.961e-3237.7550S ribosomal protein L3 OS=Yersinia pseudotubercu... [more]
RL3_YERPA9.961e-3237.7550S ribosomal protein L3 OS=Yersinia pestis bv. An... [more]
RL3_YERP39.961e-3237.7550S ribosomal protein L3 OS=Yersinia pseudotubercu... [more]
RL3_YERE89.961e-3237.7550S ribosomal protein L3 OS=Yersinia enterocolitic... [more]
RL3_SODGM9.961e-3238.2450S ribosomal protein L3 OS=Sodalis glossinidius (... [more]
RL3_PARL19.961e-3237.2050S ribosomal protein L3 OS=Parvibaculum lavamenti... [more]
RL3_ENTS89.961e-3237.7550S ribosomal protein L3 OS=Enterobacter sakazakii... [more]
RL3_ENT389.961e-3237.7550S ribosomal protein L3 OS=Enterobacter sp. (stra... [more]
RL3_ALISL9.961e-3237.2550S ribosomal protein L3 OS=Aliivibrio salmonicida... [more]
RL3_HAMD51.301e-3137.5650S ribosomal protein L3 OS=Hamiltonella defensa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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