DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BARHE (50S ribosomal protein L3 OS=Bartonella henselae GN=rplC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31
Identity = 79/208 (37.98%), Postives = 114/208 (54.81%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ ++   GHF    V  K K+ EF V+ D LL IGT +   HF+PGQ VD+              R  F G  ASHG S++HR+ GSTGQ   PGKVF            + T +N+ V   D  R L+ VRG V G+ G ++ ++DA+ KKP
Sbjct:    5 VIAQKLGMTRIYNDAGEHVPVTVLRLENCQVVAQRTVEKNGYTAVQLGVGFAKVKNTSQALRGHFAKASVEPKAKIAEFRVSPDNLLDIGTEITAEHFVPGQRVDVTGTTIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKGKKMAGHMGQVRVTTQNIEVVSTDVERGLILVRGAVSGSKGAWILVRDAI-KKP 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RM09_SCHPO (60S ribosomal protein L9, mitochondrial OS=Schizosaccharomyces pombe GN=mrpl9 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 77/206 (37.38%), Postives = 112/206 (54.37%), Query Frame = 3
Query:    3 LIAVKCGITATWD-KWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTE-DALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +I VK G+T  WD K G ++P+++L  D      V+T EK G++++QVG G +K K +TK E G+F +  +  K  +REF V +   L+  GT     +F P QYVD+              RWGF G  ASHGASLSHR+ GSTGQ   P +V              RTVKN+ V+ +D     + V+G +PG + + V++ D +
Sbjct:   46 VILVKKGMTNAWDEKTGMQVPLTILQFDRVQAIDVRTKEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGTIFTTDYFKPKQYVDVKGITKGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRVLPGRKMAGHMGHRSRTVKNLLVWAVDADLECILVKGSIPGPNKSAVYVTDTI 251          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_SINMW (50S ribosomal protein L3 OS=Sinorhizobium medicae (strain WSM419) GN=rplC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 76/204 (37.25%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  IPV+VL +++  V   +T EK G+ ++Q+G G+ K K+  K   GHF A  V  K KL EF V+ D L+ IG+ L   HF+ GQ VD+              R  F G+ A+HG S+SHRS GSTG    PG+V+            + T +N+ V   D  R L+ V+G VPG+ G+++ ++DA+
Sbjct:    5 VIAQKVGMTRVYNDAGEHIPVTVLRLENCQVVAQRTEEKNGYTAVQLGAGRSKVKNTPKAMRGHFAAASVEPKAKLVEFRVSADNLIDIGSELTAGHFVAGQLVDVTGTTIGKGFAGAIKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKGKRMAGHMGQTRVTTQNLEVVSTDEDRGLILVKGAVPGSKGSWIVVRDAI 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_KLEP7 (50S ribosomal protein L3 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 76/204 (37.25%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + +     +G ++ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLADGEEFTVGQNISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_KLEP3 (50S ribosomal protein L3 OS=Klebsiella pneumoniae (strain 342) GN=rplC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 76/204 (37.25%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + +     +G ++ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLADGEEFTVGQNISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_JANSC (50S ribosomal protein L3 OS=Jannaschia sp. (strain CCS1) GN=rplC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 80/215 (37.21%), Postives = 116/215 (53.95%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PDVXLLP 644
            +IA K G+T  + + G +IPV+VL +D   V   KT + +G+ ++Q+G G  K K  + P  G F    V  KRKL EF V  D L+ +G  +   H+  GQ+VD+              R  F G+ ASHG S+SHRS GSTGQ   PG+VF            + T +N+ + + D  R L+ ++G VPG+ G +V +KDAV K  P+  +LP
Sbjct:    6 VIAKKVGMTRLFMEDGKQIPVTVLQLDKLQVVAKKTSDSDGYSAVQLGAGTAKAKRTSAPMRGVFAKASVEPKRKLVEFRVDADNLIEVGEEIIADHYFEGQFVDVTGTSIGKGFQGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLQIVRTDTDRGLIMIKGAVPGSKGGWVTVKDAVKKPFPENAILP 220          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_HAEDU (50S ribosomal protein L3 OS=Haemophilus ducreyi GN=rplC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            LI  K G+T  +++ G  IPV+V+ ++ N V+QVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF  TE     +G  + V  F   + VD+              RW F+   A+HG SLSHR LGS GQ   PG+VF            + TV+++ V ++D  R L+ V+G VPGA+ + V +K AV
Sbjct:    4 LIGRKVGMTRVFNEDGVSIPVTVIEIEANRVTQVKTLENDGYSAIQVTTGTKKASRVTKPEAGHFVKAGVEAGRGLWEFR-TEGEEFTLGQEINVDIFADVKKVDVTGTSKGKGFAGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAGHLGAERVTVQSLEVVRVDAERKLLLVKGAVPGATNSNVIVKPAV 206          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_VIBSL (50S ribosomal protein L3 OS=Vibrio splendidus (strain LGP32) GN=rplC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 75/204 (36.76%), Postives = 107/204 (52.45%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N +SQVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF +       +G  L V  F   + VD+              RW F     +HG SLSHR+ GS GQ   PG+VF            + T +N+ + ++D  RNL+ ++G VPG++G  V +K AV
Sbjct:    4 LVGRKVGMTRVFTEEGVSIPVTVVEVEANRISQVKTLETDGYAAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFEVGAELNVELFNEIKKVDVTGTSKGKGFQGAIKRWNFSTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGSTGGNVIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_SALTY (50S ribosomal protein L3 OS=Salmonella typhimurium GN=rplC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGGVPGATGCDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_SALTI (50S ribosomal protein L3 OS=Salmonella typhi GN=rplC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGGVPGATGCDLIVKPAV 207          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_BARHE1.301e-3137.9850S ribosomal protein L3 OS=Bartonella henselae GN... [more]
RM09_SCHPO1.699e-3137.3860S ribosomal protein L9, mitochondrial OS=Schizos... [more]
RL3_SINMW1.699e-3137.2550S ribosomal protein L3 OS=Sinorhizobium medicae ... [more]
RL3_KLEP71.699e-3137.2550S ribosomal protein L3 OS=Klebsiella pneumoniae ... [more]
RL3_KLEP31.699e-3137.2550S ribosomal protein L3 OS=Klebsiella pneumoniae ... [more]
RL3_JANSC1.699e-3137.2150S ribosomal protein L3 OS=Jannaschia sp. (strain... [more]
RL3_HAEDU1.699e-3138.7350S ribosomal protein L3 OS=Haemophilus ducreyi GN... [more]
RL3_VIBSL2.219e-3136.7650S ribosomal protein L3 OS=Vibrio splendidus (str... [more]
RL3_SALTY2.219e-3138.2450S ribosomal protein L3 OS=Salmonella typhimurium... [more]
RL3_SALTI2.219e-3138.2450S ribosomal protein L3 OS=Salmonella typhi GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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