DN617775
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_CLOD6 (50S ribosomal protein L3 OS=Clostridium difficile (strain 630) GN=rplC PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23 Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 ++ K G+T + G IPV+ + +V+Q+KT +K+G+ ++Q+G K+K + KP+ GH A V LK+ L+EF V +G + F G +D+ R G P +HG S HR GS G PG+VF + TV+N+ V K+D +NL+ V+G +PGA G+ V IK+A+ Sbjct: 4 ILGKKVGMTQIFTDKGVVIPVTAVEAGPMVVTQIKTVDKDGYNAIQIGFEDAKEKALNKPKKGHLAAANV-LKKHLKEFRVDSVEGYTVGQEIKADVFEAGAKIDVTGISKGKGFQGPIKRHGQSRGPETHG-SRYHRRPGSMGACSYPGRVFKNKKLAGHMGSVKVTVQNLEVVKVDADKNLILVKGAIPGAKGSVVTIKEAI 205
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_CLOB6 (50S ribosomal protein L3 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplC PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23 Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 ++ K G+T +++ G IPV+V+ V Q KT EK+G+ ++QV G ++K KP GHF GV +KR ++EF + + L IG + F G+ VDI RW P +HG+ HR++GS G P + F TV N+ V +I P +NL+ ++G VPG + V I++ V Sbjct: 5 ILGKKLGMTQIFNENGKVIPVTVIEAGPCTVIQKKTVEKDGYEAIQVAFGDIREKLRNKPVKGHFAKAGVSVKRHIKEFKLEDSNSLEIGQEIKADVFEAGERVDISGVSKGKGFQGTIRRWNAHRGPMTHGSKF-HRAVGSMGASSDPSRTFKNKRMPGHMGNVNTTVLNLEVVRIIPEKNLILIKGGVPGPNKGLVQIRNTV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRAHW (50S ribosomal protein L3 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplC PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23 Identity = 60/207 (28.99%), Postives = 105/207 (50.72%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623 +I K G+T +D+ G I V+V+ V Q++ EK+G+ ++Q+G G K+KH+ KP++G F+ + K+ L+EF + + + +G L F G ++D+ R + G P SHG++ R+ GS G P +V+ T++N+ V +I P NL+ ++G +PGA + V + AV K+ Sbjct: 4 IIGKKLGMTTVFDETGNAIAVTVVEAGPCTVMQIRDNEKDGYSAIQLGYGAVKEKHLKKPQIGQFKKANLEPKKYLKEFRMDDASSYTVGQELKADIFQAGDFIDVSSLSKGRGFAGVMKRHNYDGGPMSHGSNFRRRA-GSIGCNSYPARVWKGKGMPGHMGNTLTTIQNLKVVEIRPDDNLIMIKGAIPGAINSIVKLTSAVKKR 209
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ANAVT (50S ribosomal protein L3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplC PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23 Identity = 61/203 (30.05%), Postives = 102/203 (50.25%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 611 ++ K G+T +D+ G IPV+V+ V +V+QVK+ + +G+ ++QVG G+ K K + +P +GH P R L+E+ + +G + F G+ VD+ R F P SHG S +HR+ GS G PG+V+ + T++ + V ++D RNL+ ++G VPG G+ + I A Sbjct: 5 ILGTKLGMTQIFDEAGVAIPVTVVQVGPCVVTQVKSKQTDGYAAIQVGYGEVKPKALNRPLLGHLAKSSAPALRHLKEYHTDSSSDYALGQEIKADIFSAGELVDVIGTSIGRGFAGNQKRNNFGRGPMSHG-SKNHRAPGSIGAGTTPGRVYPGKRMAGRLGGTRVTIRKLTVIRVDAERNLLLIKGAVPGKPGSLLSIVPA 206
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RK3_THAPS (50S ribosomal protein L3, chloroplastic OS=Thalassiosira pseudonana GN=rpl3 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23 Identity = 59/200 (29.50%), Postives = 103/200 (51.50%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFI 602 L+ K G+T +D+ G IPV++L V +++QVKT +G+ ++QVG G K +T+P++GH + + + L+EF V++ +G L V F+ GQ +++ R+ F P +HG S +HR+ GS G +PG+V +K + + +++ N++ V+G VPG GN + I Sbjct: 5 LLGNKIGMTQIFDESGNIIPVTILKVGPCVITQVKTTLNDGYNAIQVGYGNVSTKALTQPQLGHLQKSNIQPLKYLKEFHVSDPTEFNVGQILNVESFVAGQLINVTGKSIGKGFSGLQKRYNFARGPMTHG-SKNHRAPGSIGMGTSPGRVLPGKKMAGQLGNKTANIKKLKIVQVNNDENILVVKGAVPGKPGNLLSI 203
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RM03_BOVIN (39S ribosomal protein L3, mitochondrial OS=Bos taurus GN=MRPL3 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23 Identity = 72/221 (32.58%), Postives = 107/221 (48.42%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEG--FFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK--KPDVXLLPFPT 653 L+A+K G+ W K G + V++L V D V + E +L VG H + + ++ G+P K+K++ F VT++A++ GT L HF PGQYVD+ RWGFKG PA+HG + +HR G+ D +V+ RT + V++I+ N+++V G VPG V IKD+V K LPFPT Sbjct: 99 LVALKLGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKENHNGKMAALTVGGKTVSRFHKSTSILEFYQELGLPPKQKIKMFNVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTGDV-ARVWPGTKMPGQLGNVDRTAFGLKVWRINTKHNIIYVNGSVPGHRNCLVKIKDSVLPAYKDFCKNLPFPT 318
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_STRCO (50S ribosomal protein L3 OS=Streptomyces coelicolor GN=rplC PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23 Identity = 61/203 (30.05%), Postives = 97/203 (47.78%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 611 ++ K G+T WD+ +PV+V+ N+V+QV+T + +G+ S+Q+ G+ + + KP GHF V +R L E + +G + F G VD+ R FKG ASHGA HR GS G PG+VF + T +N+ V+ +D + L+ ++G VPG +G V ++ A Sbjct: 8 ILGEKLGMTQVWDENNRVVPVTVVKAGPNVVTQVRTNDVDGYESVQIAFGEIDPRKVNKPLKGHFAKADVTPRRHLVEIRTAAASEYTLGQEITAEAFESGVKVDVTAKSKGKGFAGVMKRHNFKGGKASHGAHRVHRMPGSIGGCATPGRVFKGMRMAGRMGNERVTTQNLTVHAVDAEKGLLLIKGAVPGPNGGLVLVRTA 210
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_GEOSF (50S ribosomal protein L3 OS=Geobacter sp. (strain FRC-32) GN=rplC PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23 Identity = 71/207 (34.30%), Postives = 98/207 (47.34%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623 LI K G+T + G RIPV+V+ +V Q KT EK+G+ ++QVG K+ VGH +A G RE V +G L F G +D+ RWGFKG +SHG S HR+ GS G P +VF + TV+ + V ++D A NL+ V G +PG++ VFIKD+V K Sbjct: 5 LIGKKIGMTQIFADDGRRIPVTVVEAGPCVVIQKKTKEKDGYNAIQVGFDAKEAAKANSATVGHCKAAGSGAFSFFRELRVDNVDSYNVGDVLNADLFAAGDVIDVTGTSIGKGFQGVIKRWGFKGGRSSHG-SRFHRAPGSIGCSATPSRVFKNKKMPGQLGNERVTVQRLKVVRVDAADNLILVGGAIPGSTNGLVFIKDSVKAK 210
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_CORK4 (50S ribosomal protein L3 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplC PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23 Identity = 61/206 (29.61%), Postives = 104/206 (50.49%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 ++ K G+T +D+ +PV+V+ +V+Q++T EK+G+ ++Q+ G + + KP+ GHF GV +R + E + +D L +G + V F ++VD+ R GF G A+HG +HR +G G PG+VF + T +N+ ++K+D NL+ ++G VPG G V +K AV Sbjct: 9 ILGTKLGMTQVFDEDNRVVPVTVVEAGPCVVTQIRTEEKDGYSAIQIAYGDIDPRKVNKPQSGHFAKAGVTPRRYVTEIRM-DDVLSDYEVGQDVTVELFGDVKFVDVTGTTRGHGFAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGRVFKGTRMAGRMGNNRVTTQNLKLFKVDADSNLLLIKGAVPGIRGGLVTVKTAV 213
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_CLOBJ (50S ribosomal protein L3 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplC PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23 Identity = 66/204 (32.35%), Postives = 100/204 (49.02%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 ++ K G+T +++ G IPV+V+ V Q KT EK+G+ ++QV G ++K KP GHF GV +KR ++EF + + L IG + F G+ VDI RW P SHG+ HR++GS G P + F TV N+ V +I P +NL+ ++G VPG + V I++ V Sbjct: 5 ILGKKLGMTQIFNENGKVIPVTVIEAGPCTVIQKKTVEKDGYEAIQVAFGDIREKLRNKPVKGHFAKAGVSVKRHIKEFKLEDLNSLEIGQEIKADVFEAGERVDISGVSKGKGFQGTIRRWNAHRGPMSHGSKF-HRAVGSMGASSDPSRTFKNKRMPGHMGNVNTTVLNLEVVRIIPEKNLILIKGGVPGPNKGLVQIRNTV 207 The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bpback to top |