DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:259..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_CLOD6 (50S ribosomal protein L3 OS=Clostridium difficile (strain 630) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23
Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            ++  K G+T  +   G  IPV+ +     +V+Q+KT +K+G+ ++Q+G    K+K + KP+ GH  A  V LK+ L+EF V       +G  +    F  G  +D+              R G    P +HG S  HR  GS G    PG+VF            + TV+N+ V K+D  +NL+ V+G +PGA G+ V IK+A+
Sbjct:    4 ILGKKVGMTQIFTDKGVVIPVTAVEAGPMVVTQIKTVDKDGYNAIQIGFEDAKEKALNKPKKGHLAAANV-LKKHLKEFRVDSVEGYTVGQEIKADVFEAGAKIDVTGISKGKGFQGPIKRHGQSRGPETHG-SRYHRRPGSMGACSYPGRVFKNKKLAGHMGSVKVTVQNLEVVKVDADKNLILVKGAIPGAKGSVVTIKEAI 205          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_CLOB6 (50S ribosomal protein L3 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23
Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            ++  K G+T  +++ G  IPV+V+      V Q KT EK+G+ ++QV  G  ++K   KP  GHF   GV +KR ++EF + +   L IG  +    F  G+ VDI              RW     P +HG+   HR++GS G    P + F              TV N+ V +I P +NL+ ++G VPG +   V I++ V
Sbjct:    5 ILGKKLGMTQIFNENGKVIPVTVIEAGPCTVIQKKTVEKDGYEAIQVAFGDIREKLRNKPVKGHFAKAGVSVKRHIKEFKLEDSNSLEIGQEIKADVFEAGERVDISGVSKGKGFQGTIRRWNAHRGPMTHGSKF-HRAVGSMGASSDPSRTFKNKRMPGHMGNVNTTVLNLEVVRIIPEKNLILIKGGVPGPNKGLVQIRNTV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRAHW (50S ribosomal protein L3 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23
Identity = 60/207 (28.99%), Postives = 105/207 (50.72%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            +I  K G+T  +D+ G  I V+V+      V Q++  EK+G+ ++Q+G G  K+KH+ KP++G F+   +  K+ L+EF + + +   +G  L    F  G ++D+              R  + G P SHG++   R+ GS G    P +V+              T++N+ V +I P  NL+ ++G +PGA  + V +  AV K+
Sbjct:    4 IIGKKLGMTTVFDETGNAIAVTVVEAGPCTVMQIRDNEKDGYSAIQLGYGAVKEKHLKKPQIGQFKKANLEPKKYLKEFRMDDASSYTVGQELKADIFQAGDFIDVSSLSKGRGFAGVMKRHNYDGGPMSHGSNFRRRA-GSIGCNSYPARVWKGKGMPGHMGNTLTTIQNLKVVEIRPDDNLIMIKGAIPGAINSIVKLTSAVKKR 209          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ANAVT (50S ribosomal protein L3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23
Identity = 61/203 (30.05%), Postives = 102/203 (50.25%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 611
            ++  K G+T  +D+ G  IPV+V+ V   +V+QVK+ + +G+ ++QVG G+ K K + +P +GH      P  R L+E+     +   +G  +    F  G+ VD+              R  F   P SHG S +HR+ GS G    PG+V+            + T++ + V ++D  RNL+ ++G VPG  G+ + I  A
Sbjct:    5 ILGTKLGMTQIFDEAGVAIPVTVVQVGPCVVTQVKSKQTDGYAAIQVGYGEVKPKALNRPLLGHLAKSSAPALRHLKEYHTDSSSDYALGQEIKADIFSAGELVDVIGTSIGRGFAGNQKRNNFGRGPMSHG-SKNHRAPGSIGAGTTPGRVYPGKRMAGRLGGTRVTIRKLTVIRVDAERNLLLIKGAVPGKPGSLLSIVPA 206          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RK3_THAPS (50S ribosomal protein L3, chloroplastic OS=Thalassiosira pseudonana GN=rpl3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.471e-23
Identity = 59/200 (29.50%), Postives = 103/200 (51.50%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFI 602
            L+  K G+T  +D+ G  IPV++L V   +++QVKT   +G+ ++QVG G    K +T+P++GH +   +   + L+EF V++     +G  L V  F+ GQ +++              R+ F   P +HG S +HR+ GS G   +PG+V                +K + + +++   N++ V+G VPG  GN + I
Sbjct:    5 LLGNKIGMTQIFDESGNIIPVTILKVGPCVITQVKTTLNDGYNAIQVGYGNVSTKALTQPQLGHLQKSNIQPLKYLKEFHVSDPTEFNVGQILNVESFVAGQLINVTGKSIGKGFSGLQKRYNFARGPMTHG-SKNHRAPGSIGMGTSPGRVLPGKKMAGQLGNKTANIKKLKIVQVNNDENILVVKGAVPGKPGNLLSI 203          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RM03_BOVIN (39S ribosomal protein L3, mitochondrial OS=Bos taurus GN=MRPL3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 72/221 (32.58%), Postives = 107/221 (48.42%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEG--FFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK--KPDVXLLPFPT 653
            L+A+K G+   W K G +  V++L V D  V +    E       +L VG       H +   +  ++  G+P K+K++ F VT++A++  GT L   HF PGQYVD+              RWGFKG PA+HG + +HR  G+    D   +V+             RT   + V++I+   N+++V G VPG     V IKD+V    K     LPFPT
Sbjct:   99 LVALKLGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKENHNGKMAALTVGGKTVSRFHKSTSILEFYQELGLPPKQKIKMFNVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTGDV-ARVWPGTKMPGQLGNVDRTAFGLKVWRINTKHNIIYVNGSVPGHRNCLVKIKDSVLPAYKDFCKNLPFPT 318          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_STRCO (50S ribosomal protein L3 OS=Streptomyces coelicolor GN=rplC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 61/203 (30.05%), Postives = 97/203 (47.78%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 611
            ++  K G+T  WD+    +PV+V+    N+V+QV+T + +G+ S+Q+  G+   + + KP  GHF    V  +R L E      +   +G  +    F  G  VD+              R  FKG  ASHGA   HR  GS G    PG+VF            + T +N+ V+ +D  + L+ ++G VPG +G  V ++ A
Sbjct:    8 ILGEKLGMTQVWDENNRVVPVTVVKAGPNVVTQVRTNDVDGYESVQIAFGEIDPRKVNKPLKGHFAKADVTPRRHLVEIRTAAASEYTLGQEITAEAFESGVKVDVTAKSKGKGFAGVMKRHNFKGGKASHGAHRVHRMPGSIGGCATPGRVFKGMRMAGRMGNERVTTQNLTVHAVDAEKGLLLIKGAVPGPNGGLVLVRTA 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_GEOSF (50S ribosomal protein L3 OS=Geobacter sp. (strain FRC-32) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 71/207 (34.30%), Postives = 98/207 (47.34%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            LI  K G+T  +   G RIPV+V+     +V Q KT EK+G+ ++QVG   K+        VGH +A G       RE  V       +G  L    F  G  +D+              RWGFKG  +SHG S  HR+ GS G    P +VF            + TV+ + V ++D A NL+ V G +PG++   VFIKD+V  K
Sbjct:    5 LIGKKIGMTQIFADDGRRIPVTVVEAGPCVVIQKKTKEKDGYNAIQVGFDAKEAAKANSATVGHCKAAGSGAFSFFRELRVDNVDSYNVGDVLNADLFAAGDVIDVTGTSIGKGFQGVIKRWGFKGGRSSHG-SRFHRAPGSIGCSATPSRVFKNKKMPGQLGNERVTVQRLKVVRVDAADNLILVGGAIPGSTNGLVFIKDSVKAK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_CORK4 (50S ribosomal protein L3 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 61/206 (29.61%), Postives = 104/206 (50.49%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            ++  K G+T  +D+    +PV+V+     +V+Q++T EK+G+ ++Q+  G    + + KP+ GHF   GV  +R + E  + +D L    +G  + V  F   ++VD+              R GF G  A+HG   +HR +G  G    PG+VF            + T +N+ ++K+D   NL+ ++G VPG  G  V +K AV
Sbjct:    9 ILGTKLGMTQVFDEDNRVVPVTVVEAGPCVVTQIRTEEKDGYSAIQIAYGDIDPRKVNKPQSGHFAKAGVTPRRYVTEIRM-DDVLSDYEVGQDVTVELFGDVKFVDVTGTTRGHGFAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGRVFKGTRMAGRMGNNRVTTQNLKLFKVDADSNLLLIKGAVPGIRGGLVTVKTAV 213          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_CLOBJ (50S ribosomal protein L3 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 66/204 (32.35%), Postives = 100/204 (49.02%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            ++  K G+T  +++ G  IPV+V+      V Q KT EK+G+ ++QV  G  ++K   KP  GHF   GV +KR ++EF + +   L IG  +    F  G+ VDI              RW     P SHG+   HR++GS G    P + F              TV N+ V +I P +NL+ ++G VPG +   V I++ V
Sbjct:    5 ILGKKLGMTQIFNENGKVIPVTVIEAGPCTVIQKKTVEKDGYEAIQVAFGDIREKLRNKPVKGHFAKAGVSVKRHIKEFKLEDLNSLEIGQEIKADVFEAGERVDISGVSKGKGFQGTIRRWNAHRGPMSHGSKF-HRAVGSMGASSDPSRTFKNKRMPGHMGNVNTTVLNLEVVRIIPEKNLILIKGGVPGPNKGLVQIRNTV 207          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_CLOD66.471e-2332.3550S ribosomal protein L3 OS=Clostridium difficile ... [more]
RL3_CLOB66.471e-2331.8650S ribosomal protein L3 OS=Clostridium botulinum ... [more]
RL3_BRAHW6.471e-2328.9950S ribosomal protein L3 OS=Brachyspira hyodysente... [more]
RL3_ANAVT6.471e-2330.0550S ribosomal protein L3 OS=Anabaena variabilis (s... [more]
RK3_THAPS6.471e-2329.5050S ribosomal protein L3, chloroplastic OS=Thalass... [more]
RM03_BOVIN8.452e-2332.5839S ribosomal protein L3, mitochondrial OS=Bos tau... [more]
RL3_STRCO8.452e-2330.0550S ribosomal protein L3 OS=Streptomyces coelicolo... [more]
RL3_GEOSF8.452e-2334.3050S ribosomal protein L3 OS=Geobacter sp. (strain ... [more]
RL3_CORK48.452e-2329.6150S ribosomal protein L3 OS=Corynebacterium kroppe... [more]
RL3_CLOBJ8.452e-2332.3550S ribosomal protein L3 OS=Clostridium botulinum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
back to top