DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:259..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUME (50S ribosomal protein L3 OS=Brucella melitensis GN=rplC PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUMB (50S ribosomal protein L3 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUC2 (50S ribosomal protein L3 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUAB (50S ribosomal protein L3 OS=Brucella abortus GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUA2 (50S ribosomal protein L3 OS=Brucella abortus (strain 2308) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUA1 (50S ribosomal protein L3 OS=Brucella abortus (strain S19) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ACIBY (50S ribosomal protein L3 OS=Acinetobacter baumannii (strain AYE) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  KCG+T  +   G  +PV+V+ VD N ++Q+KT E +G+ ++QV  G++++  +T  + GHF   GV   R ++EF VTE  L    +G ++GV  F  GQ VD+              RW F+   A+HG S+SHR LGSTGQ   PG+VF            + TV+ + +  +D  R+++ V+G +PGA+G  V ++  +
Sbjct:    5 LVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPTI 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ACIBT (50S ribosomal protein L3 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rplC PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  KCG+T  +   G  +PV+V+ VD N ++Q+KT E +G+ ++QV  G++++  +T  + GHF   GV   R ++EF VTE  L    +G ++GV  F  GQ VD+              RW F+   A+HG S+SHR LGSTGQ   PG+VF            + TV+ + +  +D  R+++ V+G +PGA+G  V ++  +
Sbjct:    5 LVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPTI 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ACIBC (50S ribosomal protein L3 OS=Acinetobacter baumannii (strain ACICU) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  KCG+T  +   G  +PV+V+ VD N ++Q+KT E +G+ ++QV  G++++  +T  + GHF   GV   R ++EF VTE  L    +G ++GV  F  GQ VD+              RW F+   A+HG S+SHR LGSTGQ   PG+VF            + TV+ + +  +D  R+++ V+G +PGA+G  V ++  +
Sbjct:    7 LVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPTI 212          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ACIB5 (50S ribosomal protein L3 OS=Acinetobacter baumannii (strain AB0057) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  KCG+T  +   G  +PV+V+ VD N ++Q+KT E +G+ ++QV  G++++  +T  + GHF   GV   R ++EF VTE  L    +G ++GV  F  GQ VD+              RW F+   A+HG S+SHR LGSTGQ   PG+VF            + TV+ + +  +D  R+++ V+G +PGA+G  V ++  +
Sbjct:    5 LVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPTI 210          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_BRUME9.009e-3338.7350S ribosomal protein L3 OS=Brucella melitensis GN... [more]
RL3_BRUMB9.009e-3338.7350S ribosomal protein L3 OS=Brucella melitensis bi... [more]
RL3_BRUC29.009e-3338.7350S ribosomal protein L3 OS=Brucella canis (strain... [more]
RL3_BRUAB9.009e-3338.7350S ribosomal protein L3 OS=Brucella abortus GN=rp... [more]
RL3_BRUA29.009e-3338.7350S ribosomal protein L3 OS=Brucella abortus (stra... [more]
RL3_BRUA19.009e-3338.7350S ribosomal protein L3 OS=Brucella abortus (stra... [more]
RL3_ACIBY9.009e-3334.9550S ribosomal protein L3 OS=Acinetobacter baumanni... [more]
RL3_ACIBT9.009e-3334.9550S ribosomal protein L3 OS=Acinetobacter baumanni... [more]
RL3_ACIBC9.009e-3334.9550S ribosomal protein L3 OS=Acinetobacter baumanni... [more]
RL3_ACIB59.009e-3334.9550S ribosomal protein L3 OS=Acinetobacter baumanni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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