DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:259..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ACIB3 (50S ribosomal protein L3 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  KCG+T  +   G  +PV+V+ VD N ++Q+KT E +G+ ++QV  G++++  +T  + GHF   GV   R ++EF VTE  L    +G ++GV  F  GQ VD+              RW F+   A+HG S+SHR LGSTGQ   PG+VF            + TV+ + +  +D  R+++ V+G +PGA+G  V ++  +
Sbjct:    5 LVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPTI 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BARBK (50S ribosomal protein L3 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplC1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.177e-32
Identity = 83/210 (39.52%), Postives = 117/210 (55.71%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PD 629
            +I  K G+T+ ++  G R+PV+VL +++  V   +T EK G+ ++Q+G G  K +  +K   GHF    V  K K+ EF V+ D LL +GT + V HF+PGQ VD+              R  F G  ASHG S++HR+ GSTGQ   PGKVF            + T +NV V  ID  R L+ VRG V G+ G +V ++DAV K+ PD
Sbjct:    5 VITQKLGMTSIYNDTGERVPVTVLRLENCQVIAQRTVEKNGYTAVQLGVGLAKFEKTSKALRGHFSKALVEPKAKIVEFRVSSDNLLDVGTEITVEHFVPGQRVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKGKKMAGHMGQVRVTTQNVEVVSIDVDRGLILVRGAVSGSKGAWVLVRDAVKKRLPD 214          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUSU (50S ribosomal protein L3 OS=Brucella suis GN=rplC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.537e-32
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGVAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_PASMU (50S ribosomal protein L3 OS=Pasteurella multocida GN=rplC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  +++ G  IPV+V+ ++ N V+QVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF  TE     +G  + V  F   + VD+              RW F+   A+HG SLSHR LGS GQ   PG+VF            + TV+++ V ++D  R L+ V+G VPGA+   V +K AV
Sbjct:    4 LVGRKVGMTRIFNEDGVSIPVTVIEIEANRVTQVKTVETDGYSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFADVKKVDVTGTSKGKGFAGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAGHLGNERVTVQSLEVVRVDAERKLLLVKGAVPGATNGDVIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BART1 (50S ribosomal protein L3 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 81/208 (38.94%), Postives = 116/208 (55.77%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ ++   GHF    V  K K+ EF V+ D LL IGT + V HF+PGQ VD+              R  F G  ASHG S++HR+ GSTGQ   PGKVF            + T +N+ V   D  R L+ VRG V G+ G+++ ++DAV KKP
Sbjct:    5 VIAQKLGMTRIYNDAGEHVPVTVLRLENCQVVAQRTVEKNGYTAVQLGVGFAKVKNTSQALRGHFAKASVEPKAKIAEFRVSPDNLLDIGTEITVEHFVPGQRVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKGKKMAGHMGQVRVTTQNIEVVSTDIERGLILVRGAVSGSKGSWILVRDAV-KKP 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_SHISS (50S ribosomal protein L3 OS=Shigella sonnei (strain Ss046) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKAGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ERWT9 (50S ribosomal protein L3 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK  E +G+ ++QV  G KK   +TKP  GHF   GV   R L EF   E A   +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKGLENDGYTAIQVTTGAKKASRVTKPAAGHFAKAGVEAGRGLWEFRTAEGAEFTVGQSINVDIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_VIBCM (50S ribosomal protein L3 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            LI  K G+T  + + G  IPV+V+ V+ N VSQVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF +       +G+ L V  F   + VD+              RW F+    +HG SLSHR+ GS GQ   PG+VF            + T +N+ + ++D  RNL+ ++G VPGA+G  V +K AV
Sbjct:    4 LIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_VIBCH (50S ribosomal protein L3 OS=Vibrio cholerae GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            LI  K G+T  + + G  IPV+V+ V+ N VSQVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF +       +G+ L V  F   + VD+              RW F+    +HG SLSHR+ GS GQ   PG+VF            + T +N+ + ++D  RNL+ ++G VPGA+G  V +K AV
Sbjct:    4 LIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_VIBC3 (50S ribosomal protein L3 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rplC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            LI  K G+T  + + G  IPV+V+ V+ N VSQVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF +       +G+ L V  F   + VD+              RW F+    +HG SLSHR+ GS GQ   PG+VF            + T +N+ + ++D  RNL+ ++G VPGA+G  V +K AV
Sbjct:    4 LIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_ACIB39.009e-3334.9550S ribosomal protein L3 OS=Acinetobacter baumanni... [more]
RL3_BARBK1.177e-3239.5250S ribosomal protein L3 OS=Bartonella bacilliform... [more]
RL3_BRUSU1.537e-3238.7350S ribosomal protein L3 OS=Brucella suis GN=rplC ... [more]
RL3_PASMU2.007e-3238.2450S ribosomal protein L3 OS=Pasteurella multocida ... [more]
RL3_BART12.007e-3238.9450S ribosomal protein L3 OS=Bartonella tribocorum ... [more]
RL3_SHISS2.621e-3238.2450S ribosomal protein L3 OS=Shigella sonnei (strai... [more]
RL3_ERWT92.621e-3238.2450S ribosomal protein L3 OS=Erwinia tasmaniensis (... [more]
RL3_VIBCM3.424e-3238.2450S ribosomal protein L3 OS=Vibrio cholerae seroty... [more]
RL3_VIBCH3.424e-3238.2450S ribosomal protein L3 OS=Vibrio cholerae GN=rpl... [more]
RL3_VIBC33.424e-3238.2450S ribosomal protein L3 OS=Vibrio cholerae seroty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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