DN617775
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ACIB3 (50S ribosomal protein L3 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplC PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33 Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ KCG+T + G +PV+V+ VD N ++Q+KT E +G+ ++QV G++++ +T + GHF GV R ++EF VTE L +G ++GV F GQ VD+ RW F+ A+HG S+SHR LGSTGQ PG+VF + TV+ + + +D R+++ V+G +PGA+G V ++ + Sbjct: 5 LVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPTI 210
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BARBK (50S ribosomal protein L3 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplC1 PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.177e-32 Identity = 83/210 (39.52%), Postives = 117/210 (55.71%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PD 629 +I K G+T+ ++ G R+PV+VL +++ V +T EK G+ ++Q+G G K + +K GHF V K K+ EF V+ D LL +GT + V HF+PGQ VD+ R F G ASHG S++HR+ GSTGQ PGKVF + T +NV V ID R L+ VRG V G+ G +V ++DAV K+ PD Sbjct: 5 VITQKLGMTSIYNDTGERVPVTVLRLENCQVIAQRTVEKNGYTAVQLGVGLAKFEKTSKALRGHFSKALVEPKAKIVEFRVSSDNLLDVGTEITVEHFVPGQRVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKGKKMAGHMGQVRVTTQNVEVVSIDVDRGLILVRGAVSGSKGAWVLVRDAVKKRLPD 214
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUSU (50S ribosomal protein L3 OS=Brucella suis GN=rplC PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.537e-32 Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 +IA K G+T ++ G +PV+VL +++ V +T EK G+ ++Q+G G K K+ +K GHF V K KL EF V+ D LL +G + HF+ GQ VD+ R F G ASHG S++HRS GSTGQR PGKVF + T +N+ V D R L+ VRG VPG+ G ++ ++DAV Sbjct: 5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGVAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_PASMU (50S ribosomal protein L3 OS=Pasteurella multocida GN=rplC PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T +++ G IPV+V+ ++ N V+QVKT E +G+ ++QV G KK +TKPE GHF GV R L EF TE +G + V F + VD+ RW F+ A+HG SLSHR LGS GQ PG+VF + TV+++ V ++D R L+ V+G VPGA+ V +K AV Sbjct: 4 LVGRKVGMTRIFNEDGVSIPVTVIEIEANRVTQVKTVETDGYSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFADVKKVDVTGTSKGKGFAGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAGHLGNERVTVQSLEVVRVDAERKLLLVKGAVPGATNGDVIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BART1 (50S ribosomal protein L3 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplC PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32 Identity = 81/208 (38.94%), Postives = 116/208 (55.77%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626 +IA K G+T ++ G +PV+VL +++ V +T EK G+ ++Q+G G K K+ ++ GHF V K K+ EF V+ D LL IGT + V HF+PGQ VD+ R F G ASHG S++HR+ GSTGQ PGKVF + T +N+ V D R L+ VRG V G+ G+++ ++DAV KKP Sbjct: 5 VIAQKLGMTRIYNDAGEHVPVTVLRLENCQVVAQRTVEKNGYTAVQLGVGFAKVKNTSQALRGHFAKASVEPKAKIAEFRVSPDNLLDIGTEITVEHFVPGQRVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKGKKMAGHMGQVRVTTQNIEVVSTDIERGLILVRGAVSGSKGSWILVRDAV-KKP 211
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_SHISS (50S ribosomal protein L3 OS=Shigella sonnei (strain Ss046) GN=rplC PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKAGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ERWT9 (50S ribosomal protein L3 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplC PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32 Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 L+ K G+T + + G IPV+V+ ++ N V+QVK E +G+ ++QV G KK +TKP GHF GV R L EF E A +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKGLENDGYTAIQVTTGAKKASRVTKPAAGHFAKAGVEAGRGLWEFRTAEGAEFTVGQSINVDIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_VIBCM (50S ribosomal protein L3 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 LI K G+T + + G IPV+V+ V+ N VSQVKT E +G+ ++QV G KK +TKPE GHF GV R L EF + +G+ L V F + VD+ RW F+ +HG SLSHR+ GS GQ PG+VF + T +N+ + ++D RNL+ ++G VPGA+G V +K AV Sbjct: 4 LIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_VIBCH (50S ribosomal protein L3 OS=Vibrio cholerae GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 LI K G+T + + G IPV+V+ V+ N VSQVKT E +G+ ++QV G KK +TKPE GHF GV R L EF + +G+ L V F + VD+ RW F+ +HG SLSHR+ GS GQ PG+VF + T +N+ + ++D RNL+ ++G VPGA+G V +K AV Sbjct: 4 LIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_VIBC3 (50S ribosomal protein L3 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32 Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614 LI K G+T + + G IPV+V+ V+ N VSQVKT E +G+ ++QV G KK +TKPE GHF GV R L EF + +G+ L V F + VD+ RW F+ +HG SLSHR+ GS GQ PG+VF + T +N+ + ++D RNL+ ++G VPGA+G V +K AV Sbjct: 4 LIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207 The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bpback to top |