DN617772

Overview
NameDN617772
Unique NameDN617772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2087 contig Csv1_Contig2087:94..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617772 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.242e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = -2 
Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
[Close]
BLAST of DN617772 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.523e-16
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
[Close]
BLAST of DN617772 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -2 
Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103
The following BLAST results are available for this feature:
BLAST of DN617772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBL1_SCHPO2.242e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST5.523e-1652.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
ANUB1_HUMAN2.401e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617772 ID=DN617772; Name=DN617772; organism=Citrus sinensis; type=EST; length=496bp
GAATCAGAAAACCATAGCCTTATTAGAGGCCATTTCAGAGTACGACAACA
GATAACAAAAGCTTATTATAAGCATACCATAAAACAACATTTTGCAGCTT
AATCTAAGTCATTAAGGCCACAAACGAAACAGAAAAAAGAAAGCAAACCC
AAAGAACACAGACACTGGCAGTGGACCAGAGTGCCATTAAAAACCACCAC
GCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTCA
GCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTG
CTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTAT
CAATGGTGTCTGAACTCTCAACCTCCAGGGTAATGGTTTTTCCCGTCAAT
GTCTTCACGAAAATCTGCATTCCTCCACGCAGTCTCAACACCAAATGCAG
TGTGGATTCCTTCTGAATGTTGTAAATCTGCAAGGGTCCTCCCATC
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