DN617724

Overview
NameDN617724
Unique NameDN617724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.855e-13
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = -3
Query:  122 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 376
            P +++F+A WCGPC+M+ PI ++LSK+Y   +  YKV+TD+   I++  G++S+PT++      K    +G + +      I+ F
Sbjct:   30 PAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTILFIPVDGKPKVSVGFLQEDAFENIIKDF 114          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.855e-13
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = -3
Query:  161 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 385
            SG  V+++F+A WCGPC+MI P + ELS QY   +   KV+ DE   IA  Y I S+PT +  KNG K +   GA
Sbjct:   19 SGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGA 93          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO2_CAEEL (Probable thioredoxin-2 OS=Caenorhabditis elegans GN=trx-2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.855e-13
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = -3
Query:  119 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 433
            ++ +V D T +  V+ S  PV+V+F A WCGPC+ + P ++E      G +   K+N D +  +A  YGI ++PTV  FKNGEK     G +    L   IE  L
Sbjct:   41 DIDSVEDFTEK--VIQSSVPVIVDFHAEWCGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEKISGFSGVLDDEQLDDFIEDVL 143          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  119 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 406
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  119 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 406
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  119 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 406
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = -3
Query:  122 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 430
            V  VT       ++     V+V+F+A WCGPC+ I P  +E SK Y  K+   KV+ DE   +  +  I S+PT  ++KNG   DT++GA   S L   IEK+
Sbjct:    2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 102          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = -3
Query:  164 QSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIG 403
            Q L+L     V+++F+A WCGPC++I P +DEL+ +Y  ++   KVN DE+  I   Y + S+PT +  K G   +  +G
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVG 92          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13
Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  119 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 406
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = -3
Query:  152 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPK 385
            SG  V+++F+A WCGPC+MI P + ELS Q+   +   KV+ DE   IA  Y I S+PT +  KNG K +   GA  K
Sbjct:   27 SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAK 104          
The following BLAST results are available for this feature:
BLAST of DN617724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
THIO_BORBU3.855e-1334.12Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 S... [more]
THIO2_DROYA3.855e-1346.67Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_CAEEL3.855e-1337.14Probable thioredoxin-2 OS=Caenorhabditis elegans G... [more]
THIOM_RAT6.575e-1332.29Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE6.575e-1332.29Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN6.575e-1332.29Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_PLAF78.587e-1337.86Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIOT_DROME8.587e-1337.50Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIOM_BOVIN8.587e-1332.29Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
THIO2_DROME8.587e-1344.87Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617724 ID=DN617724; Name=DN617724; organism=Citrus sinensis; type=EST; length=474bp
TAATTTGATTGTGGAAAGCAAAGTATCTTAACCCAAGGCATAGTAAGCTA
CAAGGCAAACAAACAAATGCTACAGAGAGCCTGTTTCTAGCAAACGCGTC
CTTTACTTACCATGTCTACAAGAATTTCTCTATGCTGGTGGTCAAAGTGG
ATTTAGGAACAGCACCAATCACTGTATCTTTCTTCTCGCCATTCTTAAAT
ATCATGACAGTTGGGATGCTCCTAATTCCATATCTAGTAGCAATTGAAGG
ACTCTCATCAGTATTAACCTTATAGCATTTTAGCTTCCCCACATATTGCT
TTGATAGCTCATCAATAATAGGGTGGATCATCCGGCAAGGCCCGCACCAT
GGAGCCCAGAATTCAACAAGCACAGGTGATCCAGAGTCAAGAACAAGTGA
TTGCCATGTTGCATCTGTCACAGCAGGCACTTCAACGGCAGTTTCTTGAG
CCTCGCACACGATTTGCGCACCGC
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