DN617696

Overview
NameDN617696
Unique NameDN617696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_CANAL (40S ribosomal protein S14 OS=Candida albicans GN=RPS14 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = -3
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIKLRA           G QSALRALARSG++IGRIEDVTP+P+DST
Sbjct:   43 MKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKLRATGGTKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDST 123          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_BOMMO (40S ribosomal protein S14 OS=Bombyx mori GN=RpS14 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA           GAQSALRALARS MKIGRIEDVTP+P+DST
Sbjct:   60 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPVPSDST 140          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_TRYBB (40S ribosomal protein S14 OS=Trypanosoma brucei brucei GN=RPS14 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.243e-25
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = -3
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAM+AAQDV  RCKE GI ALH+K+RA           GAQ+ALRALAR+GMKIGRIEDVTP+PTDST
Sbjct:   53 MKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRATGGVGTKSPGPGAQAALRALARAGMKIGRIEDVTPVPTDST 133          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_SCHPO (40S ribosomal protein S14 OS=Schizosaccharomyces pombe GN=rps14a PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.243e-25
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVK DRDESSPYAAMLAAQD + +CKE+GITALHIK+RA           GAQ+ALRALAR+GM+IGRIEDVTPIPTDST
Sbjct:   48 MKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_KLULA (40S ribosomal protein S14 OS=Kluyveromyces lactis GN=RPS14 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = -3
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIK+RA           G Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:   46 MKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 126          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14B_YEAST (40S ribosomal protein S14-B OS=Saccharomyces cerevisiae GN=RPS14B PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = -3
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA           G Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:   47 MKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 127          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14A_YEAST (40S ribosomal protein S14-A OS=Saccharomyces cerevisiae GN=RPS14A PE=1 SV=5)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = -3
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA           G Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:   46 MKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 126          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_TORRU (40S ribosomal protein S14 OS=Tortula ruralis GN=RPS14 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDE+SPYAAMLAAQDV+ RCKELGITALHI +RA           GAQS LRALARSGM+IGRIEDVTPIPTDST
Sbjct:   44 MKVKADRDEASPYAAMLAAQDVAQRCKELGITALHINVRATGGNKTKTPGPGAQS-LRALARSGMRIGRIEDVTPIPTDST 123          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_PROCL (40S ribosomal protein S14 OS=Procambarus clarkii GN=RPS14 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 58/80 (72.50%), Postives = 64/80 (80.00%), Query Frame = -3
Query:  244 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 483
            KVKADRDESSPYAAMLAAQDV+ +CK LGI  LHIK+RA           G QSALRALAR+GMKIGRIEDVTP+P+DST
Sbjct:   61 KVKADRDESSPYAAMLAAQDVAEKCKSLGINCLHIKIRATGGNKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDST 140          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_THESM (30S ribosomal protein S11P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps11p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.301e-18
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADRDESSPYAAM+AA+  +    E GI  +HIK+RA           GAQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   50 VKADRDESSPYAAMIAARRAAEEAMEKGINGVHIKVRAPGGSKSKNPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 128          
The following BLAST results are available for this feature:
BLAST of DN617696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS14_CANAL9.514e-2672.8440S ribosomal protein S14 OS=Candida albicans GN=R... [more]
RS14_BOMMO9.514e-2675.3140S ribosomal protein S14 OS=Bombyx mori GN=RpS14 ... [more]
RS14_TRYBB1.243e-2572.8440S ribosomal protein S14 OS=Trypanosoma brucei br... [more]
RS14_SCHPO1.243e-2572.8440S ribosomal protein S14 OS=Schizosaccharomyces p... [more]
RS14_KLULA3.615e-2570.3740S ribosomal protein S14 OS=Kluyveromyces lactis ... [more]
RS14B_YEAST4.722e-2569.1440S ribosomal protein S14-B OS=Saccharomyces cerev... [more]
RS14A_YEAST4.722e-2569.1440S ribosomal protein S14-A OS=Saccharomyces cerev... [more]
RS14_TORRU6.167e-2576.5440S ribosomal protein S14 OS=Tortula ruralis GN=RP... [more]
RS14_PROCL1.052e-2472.5040S ribosomal protein S14 OS=Procambarus clarkii G... [more]
RS11_THESM7.301e-1858.2330S ribosomal protein S11P OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617696 ID=DN617696; Name=DN617696; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTTTGCAGACACCAGTAATGCCATATGCTCTCAAGGCCGCCTATT
GTTTTTACAAAAAGCAGGAAAATAAAATCTTTTAATAGCGACAGATAAAA
CTATAAATTAGTTCCAAAATTGAAAAGTAACTTCAACTAACTTTAAGGAA
CAACTGTCCCATTCAGAATGCCCGCATAAAACAAGACAATCGGACAAACA
ACACAGCTTAAAGCCTTCTTCCTCTTCTACCACCCTTTCTGCGTGTGCTA
TCAGTGGGAATAGGGGTCACATCCTCTATGCGACCAATTTTCATCCCAGA
ACGAGCAAGGGCACGAAGAGCAGACTGGGCACCTGGACCAGGTGTTTTGG
TTTTGTTCCCACCAGTAGCACGCAGCTTAATATGAAGAGCAGTGATTCCA
AGCTCCTTGCATCTGGTTGAAACATCTTGTGCTGCAAGCATGGCAGCGTA
TGGAGAGGACTCATCTCGGTCAGCTTTCACCTTCACCT
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