DN617696

Overview
NameDN617696
Unique NameDN617696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_METKA (30S ribosomal protein S11P OS=Methanopyrus kandleri GN=rps11p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.245e-17
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            V ADR+ESSPYAAM AA+  +    E GITA+H+K+RA           GAQ+A+RALAR+G+KIGRIEDVTPIP D T
Sbjct:   48 VDADREESSPYAAMKAARRAAEEAMEKGITAVHVKVRAPGGHGPKTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 126          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_PYRKO (30S ribosomal protein S11P OS=Pyrococcus kodakaraensis GN=rps11p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.627e-17
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADRDE SPYAAM+AA+  +    E GIT +HIK+RA           GAQ+A+RAL+R+G++IGR+EDVTPIP D T
Sbjct:   51 VKADRDEPSPYAAMIAARRAAEEAMEKGITGVHIKVRAPGGSKSKSPGPGAQAAIRALSRAGLRIGRVEDVTPIPHDGT 129          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_PYRHO (30S ribosomal protein S11P OS=Pyrococcus horikoshii GN=rps11p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.124e-17
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADRDE SPYAAMLAA+  +    E GI  +HI++RA           GAQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   48 VKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_PYRFU (30S ribosomal protein S11P OS=Pyrococcus furiosus GN=rps11p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.124e-17
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADRDE SPYAAMLAA+  +    E GI  +HI++RA           GAQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   48 VKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_PYRAB (30S ribosomal protein S11P OS=Pyrococcus abyssi GN=rps11p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.124e-17
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADRDE SPYAAMLAA+  +    E GI  +HI++RA           GAQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   48 VKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_THEON (30S ribosomal protein S11P OS=Thermococcus onnurineus (strain NA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADRDE SPYAAM+AA+  +    E G   +HIK+RA           GAQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   50 VKADRDEPSPYAAMIAAKRAAEEAMEKGFVGVHIKVRAPGGSKSKTPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 128          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_THEGJ (30S ribosomal protein S11P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps11p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADRDE SPYAAM+AA+  +    E G   +HIK+RA           GAQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   49 VKADRDEPSPYAAMIAARRAAEEAMEKGFVGVHIKVRAPGGSKSKSPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 127          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_STAMF (30S ribosomal protein S11P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADR++ SPYAAM+AA   +    + GITALHIK+RA           GAQ+A+RALAR+G  IGRIEDVTPIP D+T
Sbjct:   44 VKADREKPSPYAAMIAASRAAAEAMDKGITALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTT 122          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_METMJ (30S ribosomal protein S11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = -3
Query:  247 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 480
            VK DR+ESSPYAAM  A  V+   ++ GIT +H+K+RA           GAQ+A+RALAR+GM+IGRIEDVTP+P DS
Sbjct:   40 VKQDRNESSPYAAMQMAIQVAQNARDKGITGVHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDS 117          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_ARCFU (30S ribosomal protein S11P OS=Archaeoglobus fulgidus GN=rps11p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADRDE +PY AM AA   +   KE GI  +HIK+RA           GAQ+A+RALAR+G+KIGRIEDVTPIP D T
Sbjct:   44 VKADRDEGNPYTAMQAALRAAAIAKEKGIDGVHIKVRAPGGNKHTTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 122          
The following BLAST results are available for this feature:
BLAST of DN617696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS11_METKA1.245e-1759.4930S ribosomal protein S11P OS=Methanopyrus kandler... [more]
RS11_PYRKO1.627e-1756.9630S ribosomal protein S11P OS=Pyrococcus kodakarae... [more]
RS11_PYRHO2.124e-1758.2330S ribosomal protein S11P OS=Pyrococcus horikoshi... [more]
RS11_PYRFU2.124e-1758.2330S ribosomal protein S11P OS=Pyrococcus furiosus ... [more]
RS11_PYRAB2.124e-1758.2330S ribosomal protein S11P OS=Pyrococcus abyssi GN... [more]
RS11_THEON8.072e-1755.7030S ribosomal protein S11P OS=Thermococcus onnurin... [more]
RS11_THEGJ8.072e-1755.7030S ribosomal protein S11P OS=Thermococcus gammato... [more]
RS11_STAMF8.072e-1758.2330S ribosomal protein S11P OS=Staphylothermus mari... [more]
RS11_METMJ1.377e-1656.4130S ribosomal protein S11P OS=Methanoculleus maris... [more]
RS11_ARCFU1.377e-1658.2330S ribosomal protein S11P OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617696 ID=DN617696; Name=DN617696; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTTTGCAGACACCAGTAATGCCATATGCTCTCAAGGCCGCCTATT
GTTTTTACAAAAAGCAGGAAAATAAAATCTTTTAATAGCGACAGATAAAA
CTATAAATTAGTTCCAAAATTGAAAAGTAACTTCAACTAACTTTAAGGAA
CAACTGTCCCATTCAGAATGCCCGCATAAAACAAGACAATCGGACAAACA
ACACAGCTTAAAGCCTTCTTCCTCTTCTACCACCCTTTCTGCGTGTGCTA
TCAGTGGGAATAGGGGTCACATCCTCTATGCGACCAATTTTCATCCCAGA
ACGAGCAAGGGCACGAAGAGCAGACTGGGCACCTGGACCAGGTGTTTTGG
TTTTGTTCCCACCAGTAGCACGCAGCTTAATATGAAGAGCAGTGATTCCA
AGCTCCTTGCATCTGGTTGAAACATCTTGTGCTGCAAGCATGGCAGCGTA
TGGAGAGGACTCATCTCGGTCAGCTTTCACCTTCACCT
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