DN617696

Overview
NameDN617696
Unique NameDN617696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_THEPD (30S ribosomal protein S11P OS=Thermofilum pendens (strain Hrk 5) GN=rps11p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = -3 
Query:  247 KADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 477
            KADRD+ SP+AAM AA   +    + GI  +H+K++A           GA  A+RAL R+G+ + RIEDVTP+PTDS
Sbjct:   68 KADRDKPSPWAAMQAAARAAKIALDKGIRVVHVKIKAPGGYGPKTPGPGAGPAIRALVRAGLMVDRIEDVTPLPTDS 144
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_NANEQ (30S ribosomal protein S11P OS=Nanoarchaeum equitans GN=rps11p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = -3 
Query:  250 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRA-XXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTD 480
            V ADR E SP AA+LAA+  +   KE GIT LHIK+RA            GA +A++ LAR G+KIG IEDVTP P D
Sbjct:   40 VNADRLEGSPTAAILAAKRAAALAKERGITGLHIKVRAPGGHNGPWIPGPGASAAIKTLAREGLKIGIIEDVTPTPHD 117
The following BLAST results are available for this feature:
BLAST of DN617696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS11_THEPD1.334e-1146.7530S ribosomal protein S11P OS=Thermofilum pendens ... [more]
RS11_NANEQ2.275e-1152.5630S ribosomal protein S11P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617696 ID=DN617696; Name=DN617696; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTTTGCAGACACCAGTAATGCCATATGCTCTCAAGGCCGCCTATT
GTTTTTACAAAAAGCAGGAAAATAAAATCTTTTAATAGCGACAGATAAAA
CTATAAATTAGTTCCAAAATTGAAAAGTAACTTCAACTAACTTTAAGGAA
CAACTGTCCCATTCAGAATGCCCGCATAAAACAAGACAATCGGACAAACA
ACACAGCTTAAAGCCTTCTTCCTCTTCTACCACCCTTTCTGCGTGTGCTA
TCAGTGGGAATAGGGGTCACATCCTCTATGCGACCAATTTTCATCCCAGA
ACGAGCAAGGGCACGAAGAGCAGACTGGGCACCTGGACCAGGTGTTTTGG
TTTTGTTCCCACCAGTAGCACGCAGCTTAATATGAAGAGCAGTGATTCCA
AGCTCCTTGCATCTGGTTGAAACATCTTGTGCTGCAAGCATGGCAGCGTA
TGGAGAGGACTCATCTCGGTCAGCTTTCACCTTCACCT
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