DN617678

Overview
NameDN617678
Unique NameDN617678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.362e-28
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDLT RLEK AS D+IK  IKA ++G +KGIL YTED VVSTDFV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI +++
Sbjct:  248 VVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.362e-28
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDLT RLEK AS D+IK  IKA ++G +KGIL YTED VVSTDFV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI +++
Sbjct:  248 VVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.779e-28
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = -2
Query:  297 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 578
            VVDLT RLEK A YD+IK  +K  SEG LKGILGYTE  VVS+D   D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HM+  +
Sbjct:  242 VVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDLNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.779e-28
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = -2
Query:  309 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 578
            VVDLT RL + A Y  IK A+KA ++G + GIL YTED+VVSTDF+GD+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  314 VVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 403          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.779e-28
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDLTVRLEK AS D+IK  +KA ++G +KGIL YTED VVSTDFV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI +++
Sbjct:  248 VVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.034e-28
Identity = 56/92 (60.87%), Postives = 75/92 (81.52%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDL VRLEK ASY++IK  ++  +EG+ KGI+ YT++DVVSTDF+ D+ S +FDAKAGI LS  FVKL++WYDNEWGYS RV +L+ +++K
Sbjct:  240 VVDLVVRLEKPASYEQIKEVMRKAAEGEYKGIIAYTDEDVVSTDFISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVAK 331          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.963e-28
Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDL  R+EK ASY+EIK  IK  SE  +LKGILGYTED VVSTDF+G + SSIFDA+AGIAL+  FVKLVSWYDNE+GYS RV DLI +++
Sbjct:  241 VVDLVCRIEKGASYEEIKNVIKKASESPELKGILGYTEDAVVSTDFIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIA 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDLTV LEK  +Y++I  A+K  SEG++KG+L YT++DVVS+DFV D  S   DAKAGI LS  FVKLV+WYDNEWGYS RVVDL +H++K
Sbjct:  244 VVDLTVTLEKATTYEDIMKALKEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDLTVRLEK AS D+IK  +KA ++G +KGIL YTED VVSTDFV D  SSIFD  A I+L+  FVKLVSWYDNE+GYS RVVDLI +++
Sbjct:  248 VVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDLT + EK  SY+EI AA+K  +EG+LKGILGYT DDVVS DF  D RSSIFDA AGI L+  F K+VSWYDNEWGYS RV+DL++ M+
Sbjct:  243 VVDLTFKTEKATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDLMLTMA 333          
The following BLAST results are available for this feature:
BLAST of DN617678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
G3P3_CAEEL1.362e-2869.23Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL1.362e-2869.23Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_PONAB1.779e-2865.96Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3PT_HUMAN1.779e-2867.78Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_CAEEL1.779e-2869.23Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P2_AGABI3.034e-2860.87Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_CRYNE3.963e-2869.57Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3PC_CHLRE5.176e-2864.13Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P4_CAEEL5.176e-2868.13Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P1_SYNY35.176e-2867.03Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617678 ID=DN617678; Name=DN617678; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTACTAACTAGATGAAAAATTATAAAAGCAAGTTT
CCAATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAAC
TCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAG
GTAAGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACCC
TCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACTT
AGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGG
GTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCCA
CTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAA
TACCAGCCTTGGCATCAAAGATACTTGACCTACTGTCACCAACAAAGTCG
GTGGATACCACATCATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCC
CTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCATAAGAAGCATCCT
TCTCCAGCCTCACTGTGAGGTCAACCACT
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