DN617673

Overview
NameDN617673
Unique NameDN617673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 4.639e-25
Identity = 74/191 (38.74%), Postives = 106/191 (55.50%), Query Frame = 3
Query:   42 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKV 608
            V  K   L  +  GFP +S+ ++ +     ++   +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     L  +  +  D +PLS   G +GMPG+TAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV
Sbjct:    2 VQAKTWTLKKHFEGFPTDSNFELRT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKV 179          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.912e-25
Identity = 75/192 (39.06%), Postives = 105/192 (54.69%), Query Frame = 3
Query:   42 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKV 608
            V  K   L  +  G+P  S+ ++ +  +  LK  E     VLL+ L+L+ DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     L  L+      +PLS   G +GMPG+TAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV
Sbjct:    2 VRAKSWTLKKHFVGYPTPSNFELKTVELPPLKNGE-----VLLEALFLTVDPYMRIAARKLKE---------GDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKV 179          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.598e-17
Identity = 62/192 (32.29%), Postives = 100/192 (52.08%), Query Frame = 3
Query:   51 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK 605
            +RV+L++     G P   + ++   ++   V EG    V ++ LYLS DPYMR RM++     ++  +   + ++G GV  + +S H N+ K D V       +  ++    +L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G L GQ  +L GC  VVG  G+ EK
Sbjct:    4 QRVVLNSRPGKNGHPVAENFRVEEVNLPDCVNEGQ---VQVRTLYLSVDPYMRCRMNEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEK 192          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 61/192 (31.77%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   51 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWG-STGWEEYSLVTAPQL-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK 605
            +RV+L +     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  + +S H   AK D V      W+  +++    L  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G+ EK
Sbjct:    4 QRVVLDSRPGKNGNPVAENFRVEEVSLPDTINEGQ---VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEK 192          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 59/192 (30.73%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   51 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK 605
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V       +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ   L GC  VVG  G+ EK
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEK 192          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 61/192 (31.77%), Postives = 97/192 (50.52%), Query Frame = 3
Query:   51 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWG-STGWEEYSLVTAPQL-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK 605
            +RV+L++     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  V +S H    K D V      W+  +++    L  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G++EK
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRVEEFSLPDALNEGQ---VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEK 192          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 58/192 (30.21%), Postives = 95/192 (49.48%), Query Frame = 3
Query:   51 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEK 605
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V       +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ     GC  VVG  G+ EK
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEK 192          
The following BLAST results are available for this feature:
BLAST of DN617673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PTGR1_RAT4.639e-2538.74Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_PIG7.912e-2539.06Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR2_BOVIN1.598e-1732.29Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_RAT2.551e-1531.77Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_PONAB2.551e-1530.73Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_MOUSE3.332e-1531.77Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
PTGR2_HUMAN7.423e-1530.21Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617673 ID=DN617673; Name=DN617673; organism=Citrus sinensis; type=EST; length=614bp
AGAAAAAAAACTGAGAAACAATGGCGGCTGAACAAGAAGCTGTGAGCAAT
AAGCGGGTGATTCTGAGCAACTATGTGACAGGTTTTCCAAAAGAATCAGA
CATGAAGATAACAAGTGGATCAATAAAGCTGAAGGTAGCAGAGGGTTCAA
AAGACACAGTGCTTTTGAAGAATCTTTATCTTTCTTGTGATCCTTACATG
CGATGGCGTATGAGCAAGCTTGATAGACCTTCTTTTGTTGATTCATTCCA
TCCTGGTGAGCCTATAAATGGTTATGGGGTAGCTAAAGTTTTGGATTCTA
CACATCCAAATTATGCAAAAGATGACTTGGTTTGGGGCTCCACCGGGTGG
GAGGAGTACAGTCTCGTTACAGCCCCACAGCTTTTGATTAAAATTCAGCA
TACAGATGTGCCCCTTTCATACTATACTGGAATCCTTGGTATGCCTGGTG
TGACTGCATACGCTGGTTTATACGAAGTTTGCTCTCCGAAGAAAGGTGAG
TACGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTTGTTGGCCA
ATTTGCAAAATTGGCTGGTTGCTATGTTGTTGGAAGTGCTGGAAGCAAAG
AAAAGGTCGATTTG
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