DN617672

Overview
NameDN617672
Unique NameDN617672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 6.618e-71
Identity = 126/201 (62.69%), Postives = 160/201 (79.60%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            K+D+A    E+Q+PV  VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  193 KLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.129e-70
Identity = 123/198 (62.12%), Postives = 158/198 (79.80%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG---QESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KVD+A    EKQ+ VD VF +DEMID IGVT+G G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N K+Y++GK     +  + G TEFD T+K ITPMGGFP YGIV  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  193 KVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.515e-70
Identity = 123/198 (62.12%), Postives = 157/198 (79.29%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG---QESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KVD+A    EKQI VD VF +DEMID IGVTKG G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N K+Y++GK     +  + G TEFD T+K I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  193 KVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 262.307 bits (669), Expect = 2.129e-69
Identity = 123/195 (63.08%), Postives = 154/195 (78.97%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KVD+A   FEK + VD+VF+++EMID I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y++GKG  E++ G T FDRT+K ITPMGGF HYG +K+D++M+KGC  G +KR+VTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  191 KVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEAN-GATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 2.780e-69
Identity = 125/201 (62.19%), Postives = 160/201 (79.60%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            K+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  193 KLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 6.194e-69
Identity = 120/195 (61.54%), Postives = 155/195 (79.49%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KVD+A   FEK I +D++F+KDEMID+I VTKG G++GV +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N KV+++GKG  E +   T+FD ++K ITPMGGF  YG VK+DY+M+KG   G KKRV+TLR++L  QTSR A E++++K+IDTSSKFGHG FQT +EK+ + G +K
Sbjct:  192 KVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGNAS-TDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.090e-69
Identity = 122/195 (62.56%), Postives = 154/195 (78.97%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KVD+A   FEK + VD+VF+++EMID++ VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY++GKG  E++   TEFDRT+K ITPMGGF HYG + +D++++KG   G +KRVVTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  191 KVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.802e-68
Identity = 122/195 (62.56%), Postives = 151/195 (77.44%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KVD+A   FEK + VD+VF+KDEM+D+  VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY++G  G ES +G TEFDRT+K I PMGGF  YG VK+D++++KG   G KKR+VT+R+SL   TSR A E + +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  191 KVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDES-SGATEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.848e-68
Identity = 122/195 (62.56%), Postives = 151/195 (77.44%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KVD+A   FEK + VD+VF+++EMID I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GKG  E +   T FDRT+K I PMGGF HYG+V +D++M+KG   G KKRVVTLR+SL   TSR A+EE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  191 KVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 6.848e-68
Identity = 120/201 (59.70%), Postives = 154/201 (76.62%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KV +A    EKQ+PV +VF ++E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y++G+      G    +   T +D T+K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR ALE I++KFIDT+SKFGHGRFQT QEK+ + G  K
Sbjct:  193 KVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_BOVIN6.618e-7162.6960S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_CAEEL1.129e-7062.1260S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CAEBR2.515e-7062.1260S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_YEAST2.129e-6963.0860S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_MACFA2.780e-6962.1960S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_ASPFU6.194e-6961.5460S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_KLULA8.090e-6962.5660S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_DEBHA1.802e-6862.5660S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_CANGA6.848e-6862.5660S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3L_BOVIN6.848e-6859.7060S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTAAATTTAAAAATATTCAATAGAATAAAGCACGACCATCTCTTAA
AAAATAAAATAAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAA
AAACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTA
ACTATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATG
CGTCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCC
AAACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTA
AACGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTC
TTAGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAAT
ACCATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGT
CAAATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTG
TAAACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGC
TCTGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAG
CCACCTTACGCAGACCTCTGTGAGTCTTGCGAGGAAGGCGGGTAACACCC
CAACGGGTGACAACACCTTCATAACCTTTACCTTTCGTGACACCGATGAT
GTCAATCATCTCATCCTTCTGGAAAACAGCATCAACAGGAATTTGCTTTT
CAAAGAAGCCATATGCATAGTCAACTTT
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