DN617672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23 Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 ++DYA K+I + VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK++ K+G K+I P GGF YGIV++ Y++++G +G KKR + LR+++ + S + KI +++ SK G Sbjct: 191 QLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23 Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 ++DYA K+I + VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK++ K+G K+I P GGF YGIV++ Y++++G +G KKR + LR+++ + S + KI +++ SK G Sbjct: 191 QLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23 Identity = 60/182 (32.97%), Postives = 98/182 (53.85%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---IKFIDTSSKFG 778 + DYA + + ++ + + DI G+TKGKG++G V R+G+T RK R R + +G W P V + V GQ G+ RTE NK++ K+G+ E I P GGF HYG+V+++Y++IKG GP KR+V +R + +R+ ++I+ ++++ SK G Sbjct: 171 RFDYALSILGTDVDMKSLLSEGQFADITGITKGKGFQGAVKRFGITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23 Identity = 70/180 (38.89%), Postives = 101/180 (56.11%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 +++Y K + V VF++ ++IDIIGVTKGKG++GVV R+GV LPR K +G RKV GA P+ V + GQ GYH RTE NK++ K+ E I P GGF +YGIV++ YL+I+G +G KKR + LR + + S + KI +++ S+ G Sbjct: 183 QLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSWIPQSAPKITYVNLYSQQG 343
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23 Identity = 60/175 (34.29%), Postives = 98/175 (56.00%), Query Frame = -1 Query: 254 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 778 K++YA K++ ++ VF++ + +D+I VTKGKG++GV+ R+ V R K+ +G+RKV IG+ P R+ TV GQ GYH RTE NK + K+G + + GG+ YG V +++KG GP+KR++ LR+++ + +E I++I S K Sbjct: 165 KLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG-----------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23 Identity = 64/179 (35.75%), Postives = 102/179 (56.98%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 ++DYA K+I + VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK++ K+G K+I P GGF YGIV++ Y++++G +G KKR + LR+ + + S + KI +++ S+ G Sbjct: 191 QLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPV--RPSYVFENPPKITYVNLLSQQG 351
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22 Identity = 64/182 (35.16%), Postives = 98/182 (53.85%), Query Frame = -1 Query: 248 KVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLK-QTSRLALEEIKIKFIDTSSKFG 778 +VD+A + + V VF+ E D+ G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ LG + D++P GGF +YG V Y ++KG GP KR+V R ++ RL + +++++ T+S G Sbjct: 174 RVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAVRPGDQPRL---DPEVRYVSTASNQG 336
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22 Identity = 63/180 (35.00%), Postives = 99/180 (55.00%), Query Frame = -1 Query: 248 DYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSF-TVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL--KQTSRLALEEIKIKFIDTSSKFG 772 DYA I V+ VF++ +++D+I VTKGKG++GV+ RWGV LPR K +G R+ IGA R +F +AGQ G+H RTE NK++ + G + +TP GGF YG+V+ ++M+ G G KR + +R ++ + +L + + +I +I +SK G Sbjct: 181 DYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK--------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLASKQG 343
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22 Identity = 67/180 (37.22%), Postives = 100/180 (55.56%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 +++Y KQIPV VF++ ++ DIIGVTKGKG++GV+ R+ V PR K +G RK IGA P+ V + GQ G+H RTE NK++ K+G E I P GG +YG+VK+ YL+I+G +G +KR + LR + S + KI +++ +S+ G Sbjct: 182 QLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVIKRYSVVEFPRWHKHRKGSRK---IGARGPSISTPSYVPQPGQLGFHRRTEYNKRIIKIGDNVNE--------------INPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRPSWSPESAP--KITYVNLASQQG 342
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22 Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = -1 Query: 248 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 727 VF+ E D G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ + G + TP GGFP+YG V Y ++KG GP++R+V R ++ ++ RL + +++++ T+S G Sbjct: 191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335 The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bpback to top |