DN617672

Overview
NameDN617672
Unique NameDN617672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  191 QLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  191 QLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 60/182 (32.97%), Postives = 98/182 (53.85%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---IKFIDTSSKFG 778
            + DYA       + + ++  + +  DI G+TKGKG++G V R+G+T   RK  R    R +  +G W P  V + V   GQ G+  RTE NK++ K+G+   E              I P GGF HYG+V+++Y++IKG   GP KR+V +R +     +R+  ++I+   ++++   SK G
Sbjct:  171 RFDYALSILGTDVDMKSLLSEGQFADITGITKGKGFQGAVKRFGITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23
Identity = 70/180 (38.89%), Postives = 101/180 (56.11%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            +++Y      K + V  VF++ ++IDIIGVTKGKG++GVV R+GV  LPR  K  +G RKV   GA  P+      V + GQ GYH RTE NK++ K+     E              I P GGF +YGIV++ YL+I+G  +G KKR + LR  +  + S +     KI +++  S+ G
Sbjct:  183 QLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSWIPQSAPKITYVNLYSQQG 343          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23
Identity = 60/175 (34.29%), Postives = 98/175 (56.00%), Query Frame = -1
Query:  254 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 778
            K++YA     K++ ++ VF++ + +D+I VTKGKG++GV+ R+ V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK + K+G                 + +   GG+  YG V    +++KG   GP+KR++ LR+++     +  +E   I++I  S K
Sbjct:  165 KLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG-----------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 64/179 (35.75%), Postives = 102/179 (56.98%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+ +  + S +     KI +++  S+ G
Sbjct:  191 QLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPV--RPSYVFENPPKITYVNLLSQQG 351          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 64/182 (35.16%), Postives = 98/182 (53.85%), Query Frame = -1
Query:  248 KVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLK-QTSRLALEEIKIKFIDTSSKFG 778
            +VD+A    +   +  V  VF+  E  D+ G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  LG                + D++P GGF +YG V   Y ++KG   GP KR+V  R ++      RL   + +++++ T+S  G
Sbjct:  174 RVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAVRPGDQPRL---DPEVRYVSTASNQG 336          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 63/180 (35.00%), Postives = 99/180 (55.00%), Query Frame = -1
Query:  248 DYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSF-TVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL--KQTSRLALEEIKIKFIDTSSKFG 772
            DYA       I V+ VF++ +++D+I VTKGKG++GV+ RWGV  LPR  K  +G R+   IGA    R +F    +AGQ G+H RTE NK++  +   G +              +TP GGF  YG+V+  ++M+ G   G  KR + +R ++   +   +L + + +I +I  +SK G
Sbjct:  181 DYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK--------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLASKQG 343          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 67/180 (37.22%), Postives = 100/180 (55.56%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            +++Y      KQIPV  VF++ ++ DIIGVTKGKG++GV+ R+ V   PR  K  +G RK   IGA  P+      V + GQ G+H RTE NK++ K+G    E              I P GG  +YG+VK+ YL+I+G  +G +KR + LR  +    S  +    KI +++ +S+ G
Sbjct:  182 QLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVIKRYSVVEFPRWHKHRKGSRK---IGARGPSISTPSYVPQPGQLGFHRRTEYNKRIIKIGDNVNE--------------INPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRPSWSPESAP--KITYVNLASQQG 342          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = -1
Query:  248 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 727
            VF+  E  D  G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +  G +                TP GGFP+YG V   Y ++KG   GP++R+V  R ++   ++ RL   + +++++ T+S  G
Sbjct:  191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335          
The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_SULIK1.035e-2336.3150S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIA1.035e-2336.3150S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_METLZ1.035e-2332.9750S ribosomal protein L3P OS=Methanocorpusculum la... [more]
RL3_SULTO1.766e-2338.8950S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_NANEQ1.766e-2334.2950S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]
RL3_SULSO6.711e-2335.7550S ribosomal protein L3P OS=Sulfolobus solfataric... [more]
RL3_NATPD1.952e-2235.1650S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_AERPE1.952e-2235.0050S ribosomal protein L3P OS=Aeropyrum pernix GN=r... [more]
RL3_SULAC2.550e-2237.2250S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]
RL3_HALSA3.330e-2236.2050S ribosomal protein L3P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTAAATTTAAAAATATTCAATAGAATAAAGCACGACCATCTCTTAA
AAAATAAAATAAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAA
AAACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTA
ACTATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATG
CGTCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCC
AAACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTA
AACGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTC
TTAGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAAT
ACCATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGT
CAAATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTG
TAAACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGC
TCTGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAG
CCACCTTACGCAGACCTCTGTGAGTCTTGCGAGGAAGGCGGGTAACACCC
CAACGGGTGACAACACCTTCATAACCTTTACCTTTCGTGACACCGATGAT
GTCAATCATCTCATCCTTCTGGAAAACAGCATCAACAGGAATTTGCTTTT
CAAAGAAGCCATATGCATAGTCAACTTT
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