EY662353

Overview
NameEY662353
Unique NameEY662353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.534e-14
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  191 SFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLV 514
            +F++A+ AEF+A L+F+ ++V + I +    +               I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-------LPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 133          
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.534e-14
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  191 SFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLV 514
            +F++A+ AEF+A L+F+ ++V + I +    +               I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-------LPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 136          
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.617e-14
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  173 EELTKWSFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLV 514
            +E+   +F +A+ AEF+ATL+F++  + + + + S                  IA AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+VAQ +GAI G G++
Sbjct:    3 KEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPT-----------ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGIL 105          
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.617e-14
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  191 SFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLV 514
            +F++A+ AEF+A L+F+ +++ + I +  + +               I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENP-------LPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  191 SFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLV 514
            +F++A+ AEF+A L+F+ +++ + I +                    I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKP-------LPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = 2
Query:  173 EELTKWSFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLV 514
            EE+   +  RA +AEFI+TL+F++    + I +   TD  +            +A AFG  +FV V   A ISGGH+NPAVTFG+ L   ++L+R ++Y +AQ LG++  C L+
Sbjct:   13 EEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITD--NGATTPSGLVAAALAHAFG--LFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLL 122          
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.299e-13
Identity = 40/114 (35.09%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  173 EELTKWSFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLV 514
            +E+   +F++A+ AEF+ATL+F++  + + + + S                  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+ AQ +GAI G G++
Sbjct:    3 KEVCSLAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL 105          
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.696e-13
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  191 SFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLV 514
            +F++A+ AEF+A L+F+ +++ + I +                    I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++V Y+ AQCLGAI G G++
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKP-------LPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 39/114 (34.21%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  173 EELTKWSFYRAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLV 514
            +E+   +F++A+ AEF+ATL+F++  + + + + S                  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RA+ Y+ AQ +GAI G G++
Sbjct:    3 KEVCSVAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGIL 105          
BLAST of EY662353 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.893e-13
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  200 RAIIAEFIATLLFLYITVLTVIGYKSQTDANHXXXXXXXXXXXXIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVK 517
            RA +AEFI+TLLF++  V + I Y   T                IA   G  +FV V   A ISGGH+NPAVTFGL +  +++++  V Y +AQ LG+   C L+K
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTS----DAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK 120          
The following BLAST results are available for this feature:
BLAST of EY662353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
AQP4_RAT1.534e-1437.96Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL1.534e-1437.96Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP5_PIG2.617e-1436.84Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP4_DIPME2.617e-1437.04Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_HUMAN7.614e-1437.04Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
TIP12_ARATH9.944e-1438.60Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
AQP5_RAT1.299e-1335.09Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP4_BOVIN1.696e-1336.11Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP5_MOUSE2.215e-1334.21Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
TIP21_ARATH2.893e-1340.57Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-043-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662353 ID=EY662353; Name=EY662353; organism=Citrus sinensis; type=EST; length=589bp
TTCCTCGACCCACGCGTCCGCTCTCTTATCTCCCATTGGGAATTTTTTTT
TTTTTTAAATTCTCAGTGAAGACCAATCCGTAACAATGGCCAAGGACATT
GAGGTTGGTGGGCAAGGCGAGTTCCATGCTAAGGATTACCATGACCCTCC
GCCAGCTCCATTGATCGATGCCGAGGAGCTCACTAAATGGTCATTTTACA
GGGCTATTATAGCTGAGTTCATCGCCACGCTCTTGTTTTTGTACATTACT
GTGCTGACAGTGATTGGTTACAAGAGCCAGACTGACGCCAACCACGGCGG
TGATGGATGTGGTGGTGTTGGCATTCTGGGCATCGCTTGGGCCTTTGGTG
GCATGATCTTTGTTCTTGTTTACTGCACTGCTGGTATCTCTGGTGGACAC
ATTAACCCGGCGGTGACATTTGGGCTGTTCTTGGCGCGGAAGGTGTCACT
GGTGCGAGCCGTAATGTACATGGTGGCTCAGTGTTTGGGAGCCATATGTG
GCTGCGGGCTCGTTAAGGCTTTCCAGAAGTCTTACTACACGAGATACGGC
GGTGGAGCAAATGAGCTCGCTGATGGGTACAGCACTGGG
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