DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_SALTO (30S ribosomal protein S13 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = -3 
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   ++P +KRLE +L +++G+GR+RA + L    I  +K  ++LT  EL  LR+ + + Y    DLRR +  D+ R V+I CY GIRH +GLP RGQRT TNAR+RKG +  + GKKKP R
Sbjct:    3 RLVGVDLPREKRLEIALTYIFGVGRTRALETLAATGISPDKRARDLTDEELVQLRDHIETNYKVEGDLRREVAADIRRKVEIGCYAGIRHRRGLPVRGQRTRTNARSRKGPKRTVAGKKKPGR 125
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_RHOSR (30S ribosomal protein S13 OS=Rhodococcus sp. (strain RHA1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 56/120 (46.67%), Postives = 82/120 (68.33%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGR+R+ +IL    +   L +K+L+  +L  LRE +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLAGVDLPREKRMEIALTYIYGIGRTRSKEILDATGVSPDLRSKDLSDEDLAKLREYIEESLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_RHOOB (30S ribosomal protein S13 OS=Rhodococcus opacus (strain B4) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 56/120 (46.67%), Postives = 82/120 (68.33%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGR+R+ +IL    +   L +K+L+  +L  LRE +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLAGVDLPREKRMEIALTYIYGIGRTRSKEILDATGVSPDLRSKDLSDEDLAKLREYIEESLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_RHOE4 (30S ribosomal protein S13 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 56/120 (46.67%), Postives = 82/120 (68.33%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGR+R+ +IL    +   L +K+L+  +L  LRE +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLSGVDLPREKRMEIALTYIYGIGRTRSKEILDATGVSPDLRSKDLSDEDLAKLREYIEESLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOMG (30S ribosomal protein S13 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 54/120 (45.00%), Postives = 81/120 (67.50%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGR+ A +IL +  +  +  T  LT  E+  +RE + + +  E DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG    + GKKK
Sbjct:    3 RIAGIDLPRNKRIEIALTYIYGIGRTTAQKILAESGVSVDTRTDSLTEAEVAKIREFIDKNIKVEGDLRRDVSMNIKRLMDLGCYRGLRHRKGLPVRGQRTKTNARTRKGPARTVAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_DEIGD (30S ribosomal protein S13 OS=Deinococcus geothermalis (strain DSM 11300) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = -3 
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   ++P +KR+E +L ++YGIG +RA ++L    +  +   K L+  E ++LRE + + Y    DLR  +  +++RL+DI  YRG+RH +GLP RGQRT TNARTRKG R  + GKKK TR
Sbjct:    3 RIAGVDLPREKRVEIALTYIYGIGLTRAKEVLARTGVNPDTRVKNLSETEQSALREAIEKTYKVEGDLRSEVGQNIKRLMDIGAYRGLRHRRGLPVRGQRTKTNARTRKGPRKTVAGKKKATR 125
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURS3 (30S ribosomal protein S13 OS=Burkholderia sp. (strain 383) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++G+GR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURCH (30S ribosomal protein S13 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++G+GR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURCC (30S ribosomal protein S13 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++G+GR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURCA (30S ribosomal protein S13 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++G+GR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_SALTO7.191e-2446.3430S ribosomal protein S13 OS=Salinispora tropica (... [more]
RS13_RHOSR7.191e-2446.6730S ribosomal protein S13 OS=Rhodococcus sp. (stra... [more]
RS13_RHOOB7.191e-2446.6730S ribosomal protein S13 OS=Rhodococcus opacus (s... [more]
RS13_RHOE47.191e-2446.6730S ribosomal protein S13 OS=Rhodococcus erythropo... [more]
RS13_GEOMG7.191e-2445.0030S ribosomal protein S13 OS=Geobacter metalliredu... [more]
RS13_DEIGD7.191e-2444.7230S ribosomal protein S13 OS=Deinococcus geotherma... [more]
RS13_BURS37.191e-2445.3830S ribosomal protein S13 OS=Burkholderia sp. (str... [more]
RS13_BURCH7.191e-2445.3830S ribosomal protein S13 OS=Burkholderia cenocepa... [more]
RS13_BURCC7.191e-2445.3830S ribosomal protein S13 OS=Burkholderia cenocepa... [more]
RS13_BURCA7.191e-2445.3830S ribosomal protein S13 OS=Burkholderia cenocepa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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