DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ALCBS (30S ribosomal protein S13 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 56/114 (49.12%), Postives = 76/114 (66.67%), Query Frame = -3 
Query:  121 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 459
            R+    IP +K    SL +++GIGR+RA  I     I      +ELTG +L+++R EV+++ T  DLRR I  +++RL+D+ CYRGIRH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGVNIPENKHTVISLTYIFGIGRTRAESICATTGIEQTAKVRELTGEQLDAIRGEVAKFSTEGDLRREINMNIKRLMDLGCYRGIRHRRGLPLRGQRTKTNARTRKGPRKPI 116
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ACIF5 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 53/114 (46.49%), Postives = 79/114 (69.30%), Query Frame = -3 
Query:  121 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 459
            R+    IPN+K++E +L ++YGIGR+RA  +L   +I   +  K+++  EL  +R EV+++L   DLRR +  +++RL+D+ CYRGIRH +GLP  GQRT TNARTRKG   +I
Sbjct:    3 RIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRVKDISEPELERIRSEVAKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKGPAKSI 116
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ACIF2 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 53/114 (46.49%), Postives = 79/114 (69.30%), Query Frame = -3 
Query:  121 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 459
            R+    IPN+K++E +L ++YGIGR+RA  +L   +I   +  K+++  EL  +R EV+++L   DLRR +  +++RL+D+ CYRGIRH +GLP  GQRT TNARTRKG   +I
Sbjct:    3 RIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRVKDISEPELERIRSEVAKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKGPAKSI 116
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRTD (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    +   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRT2 (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    +   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRT1 (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    +   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRSY (30S ribosomal protein S13 OS=Streptococcus suis (strain 05ZYH33) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRS7 (30S ribosomal protein S13 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    +   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRS2 (30S ribosomal protein S13 OS=Streptococcus suis (strain 98HAH33) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STREM (30S ribosomal protein S13 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    +   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_ALCBS7.191e-2449.1230S ribosomal protein S13 OS=Alcanivorax borkumens... [more]
RS13_ACIF57.191e-2446.4930S ribosomal protein S13 OS=Acidithiobacillus fer... [more]
RS13_ACIF27.191e-2446.4930S ribosomal protein S13 OS=Acidithiobacillus fer... [more]
RS13_STRTD9.392e-2447.9030S ribosomal protein S13 OS=Streptococcus thermop... [more]
RS13_STRT29.392e-2447.9030S ribosomal protein S13 OS=Streptococcus thermop... [more]
RS13_STRT19.392e-2447.9030S ribosomal protein S13 OS=Streptococcus thermop... [more]
RS13_STRSY9.392e-2448.7430S ribosomal protein S13 OS=Streptococcus suis (s... [more]
RS13_STRS79.392e-2447.9030S ribosomal protein S13 OS=Streptococcus equi su... [more]
RS13_STRS29.392e-2448.7430S ribosomal protein S13 OS=Streptococcus suis (s... [more]
RS13_STREM9.392e-2447.9030S ribosomal protein S13 OS=Streptococcus equi su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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