DN617553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRE4 (30S ribosomal protein S13 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24 Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IPNDKR+ SL +VYGIG + + +IL + + K+LT + +++R EV DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRCO (30S ribosomal protein S13 OS=Streptomyces coelicolor GN=rpsM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24 Identity = 59/121 (48.76%), Postives = 82/121 (67.77%), Query Frame = -3 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKP 459 RV +IP +KR+E +L +V+GIGR+ + Q L + N ++L+ +L ++RE V + E DLRR ++ D+ R V+I Y+G+RH +GLP RGQRTSTNARTRKG R AI GKKKP Sbjct: 3 RVSGVDIPREKRVEIALTYVFGIGRTLSQQTLAATGVDPNTRVRDLSEEQLVAIREYVDNNIKTEGDLRREVQADIRRKVEIGTYQGLRHRRGLPVRGQRTSTNARTRKGPRRAIAGKKKP 123
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_RENSM (30S ribosomal protein S13 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24 Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = -3 Query: 97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVS-RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459 R+ ++P +KRLE +L ++YG+G++RAH+ L + I + K+L+ EL LR+ + Y DLRR + D+ R V+I Y GIRH +GLP RGQRT TNARTRKG + + GKKK R Sbjct: 3 RLAGVDLPREKRLEVALTYIYGVGKTRAHKTLAETGISPDVRVKDLSDAELVQLRDYIEVNYKVEGDLRREVAADIRRKVEIGSYEGIRHRRGLPVRGQRTKTNARTRKGPKRTVAGKKKAGR 125
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24 Identity = 54/119 (45.38%), Postives = 83/119 (69.75%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IP+DKR+ +L ++YG+G+ + +IL +LNI + + K LT +L+SLR E+++Y DLRR + +++RL++I YRG+RH +GLP RGQ+T NA T KGK +I GKKK Sbjct: 3 RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITKYSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_DICT6 (30S ribosomal protein S13 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24 Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P++K++E +L ++YGIGR+ + +IL + NK K+LT E++ LREE+ + Y DLR+ + ++ RL++I CYRGIRH +GLP RGQRT NARTRKG R + K+K Sbjct: 3 RIAGVDLPSNKKIEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIENNYKVEGDLRQEVAANIRRLIEIGCYRGIRHKRGLPVRGQRTRCNARTRKGPRKTVGAKRK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BACHD (30S ribosomal protein S13 OS=Bacillus halodurans GN=rpsM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24 Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IP DKR+ SL ++YG+GRS A +IL N+ N ++LT EL +R V + DLRR + +++RL++I YRGIRH +GLP RGQ T N+RTRKG R + KKK Sbjct: 3 RIAGVDIPRDKRVVISLTYIYGVGRSTAQEILAKANVSENTRVRDLTEEELGRIRSAVEEFKVEGDLRREVSLNIKRLIEIGAYRGIRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ARTAT (30S ribosomal protein S13 OS=Arthrobacter aurescens (strain TC1) GN=rpsM PE=3 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24 Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = -3 Query: 97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVS-RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459 R+ +IP +KRLE +L ++YG+G++RAH+ L I + K+LT EL LR+ + Y DLRR + D+ R V+I Y G+RH +GLP RGQRT TNARTRKG + + GKKK R Sbjct: 3 RLAGVDIPREKRLEIALTYIYGVGKTRAHETLAATGISADVRVKDLTDAELVQLRDYIEGNYKVEGDLRREVAADIRRKVEIGSYEGLRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKAGR 125
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRMU (30S ribosomal protein S13 OS=Streptococcus mutans GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23 Identity = 57/119 (47.90%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IPNDKR+ SL +VYGIG + +IL + + K+LT + +++R EV DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK Sbjct: 3 RIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_SALAI (30S ribosomal protein S13 OS=Salinispora arenicola (strain CNS-205) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23 Identity = 57/123 (46.34%), Postives = 80/123 (65.04%), Query Frame = -3 Query: 97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459 R+ ++P +KRLE +L +++G+GR+RA + L I +K ++LT EL LR + + Y DLRR + D+ R V+I CY GIRH +GLP RGQRT TNAR+RKG + + GKKKP R Sbjct: 3 RLVGVDLPREKRLEIALTYIFGVGRTRALETLAATGISPDKRARDLTDEELVQLRNHIEANYKVEGDLRREVAADIRRKVEIGCYAGIRHRRGLPVRGQRTRTNARSRKGPKRTVAGKKKPGR 125
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PEDPA (30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23 Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+ L +++GIG + A +IL D + + ++LT + + +R EV YL DLRR + +++RL +I YRG+RH +GLP RGQ T NARTRKGK+V+I G+KK Sbjct: 3 RIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILKDAEVSEDIRVRDLTADQEDKIRAEVDNYLVEGDLRRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRKK 121 The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bpback to top |