DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRE4 (30S ribosomal protein S13 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    +   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRCO (30S ribosomal protein S13 OS=Streptomyces coelicolor GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 59/121 (48.76%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKP 459
            RV   +IP +KR+E +L +V+GIGR+ + Q L    +  N   ++L+  +L ++RE V   +  E DLRR ++ D+ R V+I  Y+G+RH +GLP RGQRTSTNARTRKG R AI GKKKP
Sbjct:    3 RVSGVDIPREKRVEIALTYVFGIGRTLSQQTLAATGVDPNTRVRDLSEEQLVAIREYVDNNIKTEGDLRREVQADIRRKVEIGTYQGLRHRRGLPVRGQRTSTNARTRKGPRRAIAGKKKP 123          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_RENSM (30S ribosomal protein S13 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = -3
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVS-RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   ++P +KRLE +L ++YG+G++RAH+ L +  I   +  K+L+  EL  LR+ +   Y    DLRR +  D+ R V+I  Y GIRH +GLP RGQRT TNARTRKG +  + GKKK  R
Sbjct:    3 RLAGVDLPREKRLEVALTYIYGVGKTRAHKTLAETGISPDVRVKDLSDAELVQLRDYIEVNYKVEGDLRREVAADIRRKVEIGSYEGIRHRRGLPVRGQRTKTNARTRKGPKRTVAGKKKAGR 125          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 54/119 (45.38%), Postives = 83/119 (69.75%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IP+DKR+  +L ++YG+G+  + +IL +LNI + +  K LT  +L+SLR E+++Y    DLRR +  +++RL++I  YRG+RH +GLP RGQ+T  NA T KGK  +I GKKK
Sbjct:    3 RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITKYSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_DICT6 (30S ribosomal protein S13 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P++K++E +L ++YGIGR+ + +IL    +  NK  K+LT  E++ LREE+ + Y    DLR+ +  ++ RL++I CYRGIRH +GLP RGQRT  NARTRKG R  +  K+K
Sbjct:    3 RIAGVDLPSNKKIEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIENNYKVEGDLRQEVAANIRRLIEIGCYRGIRHKRGLPVRGQRTRCNARTRKGPRKTVGAKRK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BACHD (30S ribosomal protein S13 OS=Bacillus halodurans GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IP DKR+  SL ++YG+GRS A +IL   N+  N   ++LT  EL  +R  V  +    DLRR +  +++RL++I  YRGIRH +GLP RGQ T  N+RTRKG R  +  KKK
Sbjct:    3 RIAGVDIPRDKRVVISLTYIYGVGRSTAQEILAKANVSENTRVRDLTEEELGRIRSAVEEFKVEGDLRREVSLNIKRLIEIGAYRGIRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ARTAT (30S ribosomal protein S13 OS=Arthrobacter aurescens (strain TC1) GN=rpsM PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = -3
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVS-RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   +IP +KRLE +L ++YG+G++RAH+ L    I   +  K+LT  EL  LR+ +   Y    DLRR +  D+ R V+I  Y G+RH +GLP RGQRT TNARTRKG +  + GKKK  R
Sbjct:    3 RLAGVDIPREKRLEIALTYIYGVGKTRAHETLAATGISADVRVKDLTDAELVQLRDYIEGNYKVEGDLRREVAADIRRKVEIGSYEGLRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKAGR 125          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRMU (30S ribosomal protein S13 OS=Streptococcus mutans GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 57/119 (47.90%), Postives = 77/119 (64.71%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG   + +IL    +   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_SALAI (30S ribosomal protein S13 OS=Salinispora arenicola (strain CNS-205) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 57/123 (46.34%), Postives = 80/123 (65.04%), Query Frame = -3
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   ++P +KRLE +L +++G+GR+RA + L    I  +K  ++LT  EL  LR  + + Y    DLRR +  D+ R V+I CY GIRH +GLP RGQRT TNAR+RKG +  + GKKKP R
Sbjct:    3 RLVGVDLPREKRLEIALTYIFGVGRTRALETLAATGISPDKRARDLTDEELVQLRNHIEANYKVEGDLRREVAADIRRKVEIGCYAGIRHRRGLPVRGQRTRTNARSRKGPKRTVAGKKKPGR 125          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PEDPA (30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+   L +++GIG + A +IL D  +   +  ++LT  + + +R EV  YL   DLRR +  +++RL +I  YRG+RH +GLP RGQ T  NARTRKGK+V+I G+KK
Sbjct:    3 RIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILKDAEVSEDIRVRDLTADQEDKIRAEVDNYLVEGDLRRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRKK 121          
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_STRE49.392e-2447.9030S ribosomal protein S13 OS=Streptococcus equi su... [more]
RS13_STRCO9.392e-2448.7630S ribosomal protein S13 OS=Streptomyces coelicol... [more]
RS13_RENSM9.392e-2445.5330S ribosomal protein S13 OS=Renibacterium salmoni... [more]
RS13_PHYAS9.392e-2445.3830S ribosomal protein S13 OS=Phytoplasma australie... [more]
RS13_DICT69.392e-2445.0030S ribosomal protein S13 OS=Dictyoglomus thermoph... [more]
RS13_BACHD9.392e-2445.3830S ribosomal protein S13 OS=Bacillus halodurans G... [more]
RS13_ARTAT9.392e-2446.3430S ribosomal protein S13 OS=Arthrobacter aurescen... [more]
RS13_STRMU1.227e-2347.9030S ribosomal protein S13 OS=Streptococcus mutans ... [more]
RS13_SALAI1.227e-2346.3430S ribosomal protein S13 OS=Salinispora arenicola... [more]
RS13_PEDPA1.227e-2343.7030S ribosomal protein S13 OS=Pediococcus pentosace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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