DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOSF (30S ribosomal protein S13 OS=Geobacter sp. (strain FRC-32) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGRS + +IL +  +  N  +  LT  E+  +RE + + +  E DLRR I  +++RL+D+ CYRG+RH +GLP  GQRT TNARTRKG    + GKKK
Sbjct:    3 RIAGIDLPRNKRIEIALTYIYGIGRSTSQKILAEAGVDANTRSDNLTESEVAKIRENIDKNVKVEGDLRRDISMNIKRLMDLGCYRGLRHRKGLPVHGQRTKTNARTRKGPARTVAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_DICTD (30S ribosomal protein S13 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P++K++E +L ++YGIGR+ + +IL    +  NK  K+LT  E++ LREE+ + Y    DLR+ +  ++ RL++I CYRGIRH +GLP RGQRT  NARTRKG R  +  K+K
Sbjct:    3 RIAGVDLPSNKKVEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIENNYKVEGDLRQEVAANIRRLIEIGCYRGIRHKRGLPVRGQRTRCNARTRKGPRKTVGAKRK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_DEIDV (30S ribosomal protein S13 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = -3
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            RV   ++P +KR+E +L ++YGIG +R+ ++L    I  +   K LT  E ++LR+ + +    E DLR  +  +++RL+DI  YRG+RH +GLP RGQRT TNARTRKG +  + GKKK TR
Sbjct:    3 RVAGVDLPREKRIEIALTYIYGIGLTRSKEVLAQTGISADTRVKNLTEAEQSTLRDAIEKTFKVEGDLRSEVGQNIKRLMDIGAYRGLRHRRGLPVRGQRTKTNARTRKGPKKTVAGKKKATR 125          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURXL (30S ribosomal protein S13 OS=Burkholderia xenovorans (strain LB400) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  +YGIGR+R+  I     +  +K  K+L   +L  LREEV +++   DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIYGIGRTRSRDICVAAGVAFSKKVKDLNDADLEKLREEVGKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQSLKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BIFLI (30S ribosomal protein S13 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 56/123 (45.53%), Postives = 81/123 (65.85%), Query Frame = -3
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   +IPN+KR+E +L +++G+GR+RA + L    I   +  K+LT  +L +LR+ + + Y    DLRR I  D+ R + I CY+G RH +GLP RGQRT TNARTRKG +  + GKKK T+
Sbjct:    3 RLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ANOFW (30S ribosomal protein S13 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IP DKR+  SL ++YGIG++ A +IL +  +      ++LT  EL  +RE V R     DLRR +  +++RL++I CYRG+RH +GLP RGQ T  NARTRKG R  +  KKK
Sbjct:    3 RIAGVDIPRDKRVVISLTYIYGIGKATAQKILAEAGVSEDTRVRDLTEEELGKIREIVDRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PARL1 (30S ribosomal protein S13 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 56/120 (46.67%), Postives = 79/120 (65.83%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IP +KR+  +L +++GIG ++A +I   + I   +   ELT  E+  +RE + R YL   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTNKRVVIALTYIHGIGNTKAKEICGTVGIPAERRVNELTDAEVIQIREAIDRDYLVEGDLRREVSMNIKRLMDLGCYRGLRHRKGLPVRGQRTHTNARTRKGPAKAIAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_NOSP7 (30S ribosomal protein S13 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E  L ++YGIG SRA +I+    +  +   K+L+  ++ +LR E+ S Y    DLRR    +++RLVDI  YRG RH  GLP RGQRT TNARTR+G+R  + GKKK
Sbjct:    3 RIAGVDLPRDKRVEIGLTYIYGIGLSRAQEIIAATGVNPDTRVKDLSDADVTALRGEIESNYQVEGDLRRLESLNIKRLVDIGTYRGRRHRMGLPVRGQRTRTNARTRRGRRQTVAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_EXIS2 (30S ribosomal protein S13 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IP +KR+  SL ++YG+G++ A ++L +  I     T+ELT  +LN LR+ + +     DLRR I  +++RL++I CYRG+RH +GLP RGQ T  N+RTRKG R  +  KKK
Sbjct:    3 RIAGVDIPREKRIVISLTYIYGVGKTTAQKVLKEAGISEDTRTRELTEEQLNQLRDGLDKVKVEGDLRREISLNIKRLIEIGCYRGVRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURPP (30S ribosomal protein S13 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  +YG+GR+R+  I     +  +K  K+L   +L  LREEV +++   DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIYGVGRTRSRDICVAAGVAFSKKVKDLNDADLEKLREEVGKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQSLKK 121          
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_GEOSF1.227e-2345.0030S ribosomal protein S13 OS=Geobacter sp. (strain... [more]
RS13_DICTD1.227e-2345.0030S ribosomal protein S13 OS=Dictyoglomus turgidum... [more]
RS13_DEIDV1.227e-2344.7230S ribosomal protein S13 OS=Deinococcus deserti (... [more]
RS13_BURXL1.227e-2346.2230S ribosomal protein S13 OS=Burkholderia xenovora... [more]
RS13_BIFLI1.227e-2345.5330S ribosomal protein S13 OS=Bifidobacterium longu... [more]
RS13_ANOFW1.227e-2345.3830S ribosomal protein S13 OS=Anoxybacillus flavith... [more]
RS13_PARL11.602e-2346.6730S ribosomal protein S13 OS=Parvibaculum lavament... [more]
RS13_NOSP71.602e-2346.6730S ribosomal protein S13 OS=Nostoc punctiforme (s... [more]
RS13_EXIS21.602e-2343.7030S ribosomal protein S13 OS=Exiguobacterium sibir... [more]
RS13_BURPP1.602e-2345.3830S ribosomal protein S13 OS=Burkholderia phytofir... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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