DN617553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOSF (30S ribosomal protein S13 OS=Geobacter sp. (strain FRC-32) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23 Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P +KR+E +L ++YGIGRS + +IL + + N + LT E+ +RE + + + E DLRR I +++RL+D+ CYRG+RH +GLP GQRT TNARTRKG + GKKK Sbjct: 3 RIAGIDLPRNKRIEIALTYIYGIGRSTSQKILAEAGVDANTRSDNLTESEVAKIRENIDKNVKVEGDLRRDISMNIKRLMDLGCYRGLRHRKGLPVHGQRTKTNARTRKGPARTVAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_DICTD (30S ribosomal protein S13 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23 Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P++K++E +L ++YGIGR+ + +IL + NK K+LT E++ LREE+ + Y DLR+ + ++ RL++I CYRGIRH +GLP RGQRT NARTRKG R + K+K Sbjct: 3 RIAGVDLPSNKKVEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIENNYKVEGDLRQEVAANIRRLIEIGCYRGIRHKRGLPVRGQRTRCNARTRKGPRKTVGAKRK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_DEIDV (30S ribosomal protein S13 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23 Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = -3 Query: 97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459 RV ++P +KR+E +L ++YGIG +R+ ++L I + K LT E ++LR+ + + E DLR + +++RL+DI YRG+RH +GLP RGQRT TNARTRKG + + GKKK TR Sbjct: 3 RVAGVDLPREKRIEIALTYIYGIGLTRSKEVLAQTGISADTRVKNLTEAEQSTLRDAIEKTFKVEGDLRSEVGQNIKRLMDIGAYRGLRHRRGLPVRGQRTKTNARTRKGPKKTVAGKKKATR 125
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURXL (30S ribosomal protein S13 OS=Burkholderia xenovorans (strain LB400) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23 Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ IPN + E L +YGIGR+R+ I + +K K+L +L LREEV +++ DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A KK Sbjct: 3 RIAGVNIPNHQHTEIGLTAIYGIGRTRSRDICVAAGVAFSKKVKDLNDADLEKLREEVGKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQSLKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BIFLI (30S ribosomal protein S13 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23 Identity = 56/123 (45.53%), Postives = 81/123 (65.85%), Query Frame = -3 Query: 97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459 R+ +IPN+KR+E +L +++G+GR+RA + L I + K+LT +L +LR+ + + Y DLRR I D+ R + I CY+G RH +GLP RGQRT TNARTRKG + + GKKK T+ Sbjct: 3 RLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ANOFW (30S ribosomal protein S13 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23 Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IP DKR+ SL ++YGIG++ A +IL + + ++LT EL +RE V R DLRR + +++RL++I CYRG+RH +GLP RGQ T NARTRKG R + KKK Sbjct: 3 RIAGVDIPRDKRVVISLTYIYGIGKATAQKILAEAGVSEDTRVRDLTEEELGKIREIVDRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PARL1 (30S ribosomal protein S13 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpsM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23 Identity = 56/120 (46.67%), Postives = 79/120 (65.83%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ IP +KR+ +L +++GIG ++A +I + I + ELT E+ +RE + R YL DLRR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG AI GKKK Sbjct: 3 RIAGVNIPTNKRVVIALTYIHGIGNTKAKEICGTVGIPAERRVNELTDAEVIQIREAIDRDYLVEGDLRREVSMNIKRLMDLGCYRGLRHRKGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_NOSP7 (30S ribosomal protein S13 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23 Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+E L ++YGIG SRA +I+ + + K+L+ ++ +LR E+ S Y DLRR +++RLVDI YRG RH GLP RGQRT TNARTR+G+R + GKKK Sbjct: 3 RIAGVDLPRDKRVEIGLTYIYGIGLSRAQEIIAATGVNPDTRVKDLSDADVTALRGEIESNYQVEGDLRRLESLNIKRLVDIGTYRGRRHRMGLPVRGQRTRTNARTRRGRRQTVAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_EXIS2 (30S ribosomal protein S13 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpsM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23 Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IP +KR+ SL ++YG+G++ A ++L + I T+ELT +LN LR+ + + DLRR I +++RL++I CYRG+RH +GLP RGQ T N+RTRKG R + KKK Sbjct: 3 RIAGVDIPREKRIVISLTYIYGVGKTTAQKVLKEAGISEDTRTRELTEEQLNQLRDGLDKVKVEGDLRREISLNIKRLIEIGCYRGVRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURPP (30S ribosomal protein S13 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23 Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ IPN + E L +YG+GR+R+ I + +K K+L +L LREEV +++ DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A KK Sbjct: 3 RIAGVNIPNHQHTEIGLTAIYGVGRTRSRDICVAAGVAFSKKVKDLNDADLEKLREEVGKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQSLKK 121 The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bpback to top |