DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BORBZ (30S ribosomal protein S13 OS=Borrelia burgdorferi (strain ZS7) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 55/119 (46.22%), Postives = 81/119 (68.07%), Query Frame = -3 
Query:  109 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 459
            R+   ++PN+K+L+ +L  +YGIGR+RA ++    +I  +K+ K+L   E+N LR+ + S Y+    LR  +   ++RL+DI CYRG+RH +GLP RGQRT TNARTRKGKR  +  KK
Sbjct:    3 RISGIDLPNNKQLKIALTSIYGIGRTRALEVCNKSSISPSKIAKDLDNDEVNRLRKVIESDYIVEGKLRSEVAMSIKRLMDIACYRGVRHRKGLPLRGQRTKTNARTRKGKRKTVANKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BORBU (30S ribosomal protein S13 OS=Borrelia burgdorferi GN=rpsM PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 55/119 (46.22%), Postives = 81/119 (68.07%), Query Frame = -3 
Query:  109 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 459
            R+   ++PN+K+L+ +L  +YGIGR+RA ++    +I  +K+ K+L   E+N LR+ + S Y+    LR  +   ++RL+DI CYRG+RH +GLP RGQRT TNARTRKGKR  +  KK
Sbjct:    3 RISGIDLPNNKQLKIALTSIYGIGRTRALEVCNKSSISPSKIAKDLDNDEVNRLRKVIESDYIVEGKLRSEVAMSIKRLMDIACYRGVRHRKGLPLRGQRTKTNARTRKGKRKTVANKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BIFLO (30S ribosomal protein S13 OS=Bifidobacterium longum GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = -3 
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   +IPN+KR+E +L +++G+GR+RA + L    I   +  K+LT  +L +LR+ + + Y    DLRR +  D+ R + I CY+G RH +GLP RGQRT TNARTRKG +  + GKKK T+
Sbjct:    3 RLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BIFLD (30S ribosomal protein S13 OS=Bifidobacterium longum (strain DJO10A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = -3 
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   +IPN+KR+E +L +++G+GR+RA + L    I   +  K+LT  +L +LR+ + + Y    DLRR +  D+ R + I CY+G RH +GLP RGQRT TNARTRKG +  + GKKK T+
Sbjct:    3 RLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BIFAA (30S ribosomal protein S13 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rpsM PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = -3 
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVS-RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   +IPN+KR+E +L +++G+GR+RA + L    I   +  K+LT  +L +LR+ +   Y    DLRR I  D+ R + I CY+G RH +GLP RGQRT TNARTRKG +  + GKKK T+
Sbjct:    3 RLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGINPDIRVKDLTDEQLITLRDYLEGNYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRZP (30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain P1031) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.092e-23
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  ++LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRZJ (30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain JJA) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.092e-23
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  ++LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRR6 (30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.092e-23
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  ++LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPS (30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain CGSP14) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.092e-23
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  ++LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPN (30S ribosomal protein S13 OS=Streptococcus pneumoniae GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.092e-23
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  ++LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BORBZ1.602e-2346.2230S ribosomal protein S13 OS=Borrelia burgdorferi ... [more]
RS13_BORBU1.602e-2346.2230S ribosomal protein S13 OS=Borrelia burgdorferi ... [more]
RS13_BIFLO1.602e-2344.7230S ribosomal protein S13 OS=Bifidobacterium longu... [more]
RS13_BIFLD1.602e-2344.7230S ribosomal protein S13 OS=Bifidobacterium longu... [more]
RS13_BIFAA1.602e-2345.5330S ribosomal protein S13 OS=Bifidobacterium adole... [more]
RS13_STRZP2.092e-2347.9030S ribosomal protein S13 OS=Streptococcus pneumon... [more]
RS13_STRZJ2.092e-2347.9030S ribosomal protein S13 OS=Streptococcus pneumon... [more]
RS13_STRR62.092e-2347.9030S ribosomal protein S13 OS=Streptococcus pneumon... [more]
RS13_STRPS2.092e-2347.9030S ribosomal protein S13 OS=Streptococcus pneumon... [more]
RS13_STRPN2.092e-2347.9030S ribosomal protein S13 OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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