EY662346

Overview
NameEY662346
Unique NameEY662346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:25..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662346 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  244 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 558
            RA +AEFI+            I +   TD        +G+    +A AFG  +FV V   A ISGGH+NPAVTFG+ L   ++L+R ++Y +AQ LG+++   L+
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTP--SGLVAAALAHAFG--LFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLL 122          
BLAST of EY662346 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  220 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 558
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ Y+VAQ LGA++G  ++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL 104          
BLAST of EY662346 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  220 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 558
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ YM AQ LGA++G  ++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVL 104          
BLAST of EY662346 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  220 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 558
            E+   +F++A+ AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+ AQ +GAI+G G++
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL 105          
BLAST of EY662346 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  358 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAI 540
            G+G LG+A+AFG  +  + Y   GISGGH NPAV+ GL +A K      V Y+VAQ LGA+
Sbjct:   33 GIGFLGVAFAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAV 93          
BLAST of EY662346 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  220 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK 561
            E T+    +A +AEFI+            + +   T+        +G+    +A AFG  +FV V   A ISGGH+NPAVTFG F+   ++L+R ++Y +AQ LG++    ++K
Sbjct:   13 EATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTP--SGLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILK 122          
BLAST of EY662346 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  220 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV 558
            E+   +F++A+ AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RA+ Y+ AQ +GAI+G G++
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGIL 105          
The following BLAST results are available for this feature:
BLAST of EY662346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
TIP12_ARATH4.348e-1137.14Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
MIP_SHEEP5.678e-1136.28Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_RABIT5.678e-1136.28Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP5_RAT5.678e-1134.51Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQPZ1_AGRT57.416e-1150.82Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
TIP11_ARATH9.685e-1133.33Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
AQP5_MOUSE9.685e-1133.63Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-043-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662346 ID=EY662346; Name=EY662346; organism=Citrus sinensis; type=EST; length=574bp
TCTCGTCGACCCACGCGTCCGCAAAAAAAAATAACAAAAAGAAAAAGGCT
TCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTT
CTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTG
GCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGA
GCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCT
TGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTG
ACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGG
CTGTGCCGGCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTGGCATGA
TCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAAC
CCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCG
TGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTGTTG
GGTTGGTCAAGGCTTTCCAAAAAT
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