DN617490

Overview
NameDN617490
Unique NameDN617490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SERP5 (Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.050e-16
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = -3 
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+I+R+ +  +   G+LIN GRGP VDE  L+ AL  G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA+  + NL A
Sbjct:  216 HMISRDQLAKMKKSGILINAGRGPVVDEAALIEALQNGTIHAAGLDVFEKEPLPVSSPLLTLPNVVALPHIGSATHETRYGMAECAVDNLIA 307
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: YN14_YEAST (Putative 2-hydroxyacid dehydrogenase YNL274C OS=Saccharomyces cerevisiae GN=YNL274C PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = -3 
Query:  280 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV*LFHE 603
            H+IN E I+ +    V++N  RG  +DE+ +  AL  G++  AGLDVFE EP + +EL  +  V+ +PH+G+ +VETRK M +LV+ N +   L   +LT V  L +E
Sbjct:  233 HLINAETIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEPKISKELLSMSQVLGLPHMGTHSVETRKKMEELVVENAKNVILTGKVLTIVPELQNE 340
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERPY (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGREQLAKIKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERPS (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERPP (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERPN (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGREQLAKMKSSAILINAGRGPVVDEQTLIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERPE (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERPB (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERPA (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305
The following BLAST results are available for this feature:
BLAST of DN617490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
GHRB_SERP55.050e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Serratia... [more]
YN14_YEAST8.613e-1640.74Putative 2-hydroxyacid dehydrogenase YNL274C OS=Sa... [more]
GHRB_YERPY8.613e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPS8.613e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPP8.613e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPN8.613e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPG8.613e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPE8.613e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPB8.613e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPA8.613e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617490 ID=DN617490; Name=DN617490; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTAATAATATTTAACTAATTCTACTCACAACTACTTAGTTCAATA
GTACAACTAACATCAATCATTTTAGAAGTATCCGTGATGTCAAATCAACA
TCATATGCAACTGCTGCAATTTAAGAATTTAATTAAAACATGTTGCTGAA
GATCTTAAAGTAATTGGCTAAGGCTTCGGGACAAATTGTACCAGGGCCTT
AAAACAATGTTCTTTAGATAAAACATACTTAAGTAGCAGCAGCAGGATGG
AGCCTTCAATCGGTCTTAAACTTGCATCTTTCATGAAACAATCAAACTAC
TGGAGTAAGCAGCGGTTTGTTCAGAAAATGAGCTTCCAAATTCCCAAGTA
CAAGGTCAGCCATGGTTTTGCGGGTTTCCACTGTGCCACTTCCTACATGT
GGCATAAGGACCACATTTTCTAGACCAAAGAGCTCCTCAGGTACATGAGG
CTCATTTTCAAACACATCGAGCCCAGCTCCGCCTAAACGGCCTTCAACCA
GTGCAGACAACAGTTCACGTTCATCCACGTGAGGACCCCTCCCAATGTTG
ATGAGAACACCTTTTGGTCCCAAAGCATCAATGACTTCACGATTAATGAT
ATGGC
back to top