DN617490

Overview
NameDN617490
Unique NameDN617490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL5 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFGKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SHISS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella sonnei (strain Ss046) GN=ghrB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SHIFL (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri GN=ghrB PE=3 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SHIDS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ghrB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SHIB3 (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ENTS8 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I  E    +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP   +  L  ++NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGAEQFRKMKKSAIFINAGRGPVVDENALIAALQSGEIHAAGLDVFEQEPLSKDSPLLTMKNVVALPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOUT (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain UTI89 / UPEC) GN=ghrB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOSM (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOSE (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain SE11) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLI (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12) GN=ghrB PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
The following BLAST results are available for this feature:
BLAST of DN617490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
GHRB_ECOL58.062e-1445.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_SHISS1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_SHIFL1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_SHIDS1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_SHIB31.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_ENTS81.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_ECOUT1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOSM1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOSE1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOLI1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617490 ID=DN617490; Name=DN617490; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTAATAATATTTAACTAATTCTACTCACAACTACTTAGTTCAATA
GTACAACTAACATCAATCATTTTAGAAGTATCCGTGATGTCAAATCAACA
TCATATGCAACTGCTGCAATTTAAGAATTTAATTAAAACATGTTGCTGAA
GATCTTAAAGTAATTGGCTAAGGCTTCGGGACAAATTGTACCAGGGCCTT
AAAACAATGTTCTTTAGATAAAACATACTTAAGTAGCAGCAGCAGGATGG
AGCCTTCAATCGGTCTTAAACTTGCATCTTTCATGAAACAATCAAACTAC
TGGAGTAAGCAGCGGTTTGTTCAGAAAATGAGCTTCCAAATTCCCAAGTA
CAAGGTCAGCCATGGTTTTGCGGGTTTCCACTGTGCCACTTCCTACATGT
GGCATAAGGACCACATTTTCTAGACCAAAGAGCTCCTCAGGTACATGAGG
CTCATTTTCAAACACATCGAGCCCAGCTCCGCCTAAACGGCCTTCAACCA
GTGCAGACAACAGTTCACGTTCATCCACGTGAGGACCCCTCCCAATGTTG
ATGAGAACACCTTTTGGTCCCAAAGCATCAATGACTTCACGATTAATGAT
ATGGC
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